Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2528

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10895 and 10896 are separated by 385 nucleotides10896 and 10897 are separated by 159 nucleotides mRNA_2527: 10895 - BLAST protein DGCR14-like [Mucor ambiguus], at 363,824 to 364,696 10895 mRNA_2528: 10896 - HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335, at 365,082 to 366,780 10896 mRNA_2529: 10897 - K01613 psd, PISD phosphatidylserine decarboxylase, at 366,940 to 368,677 10897

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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364,197 - 10895 mRNA_2527 0.43 -0.6
364,236 - 10895 mRNA_2527 0.47 +0.6
364,249 + 10895 mRNA_2527 0.49 +0.4
364,801 + -0.5
365,106 + +1.0
365,272 + 10896 mRNA_2528 0.11 +1.2
365,991 - 10896 mRNA_2528 0.54 -0.6
366,085 + 10896 mRNA_2528 0.59 -1.2
366,710 + -0.2
367,018 - +0.1
367,274 - 10897 mRNA_2529 0.19 -0.7
367,460 - 10897 mRNA_2529 0.30 -0.3
367,469 + 10897 mRNA_2529 0.30 -0.5
367,690 - 10897 mRNA_2529 0.43 -0.2
367,720 - 10897 mRNA_2529 0.45 -1.5
367,759 - 10897 mRNA_2529 0.47 -1.4

Or see this region's nucleotide sequence