Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2587

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10955 and 10956 are separated by 291 nucleotides mRNA_2587: 10955 - K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1, at 543,076 to 544,917 10955 mRNA_2588: 10956 - K03246 EIF3I translation initiation factor 3 subunit I, at 545,209 to 547,043 10956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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542,176 - -1.0
542,249 - +0.8
542,571 + -0.0
542,630 + -1.0
542,747 - -0.6
542,750 - +0.0
542,757 - -2.3
542,796 + -0.1
542,817 + -0.1
542,836 + -1.2
543,018 - +0.3
543,877 + 10955 mRNA_2587 0.43 +1.8
544,185 - 10955 mRNA_2587 0.60 -0.4
544,463 - 10955 mRNA_2587 0.75 -1.1
544,767 + +0.8
544,771 - -0.8
545,191 + -1.7

Or see this region's nucleotide sequence