Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2612

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10979 and 10980 are separated by 127 nucleotides10980 and 10981 are separated by 239 nucleotides mRNA_2611: 10979 - BLAST phosphatase iiic [Colletotrichum gloeosporioides ..., at 591,297 to 591,714 10979 mRNA_2612: 10980 - HMMPfam-Protein kinase C terminal domain-PF00433, at 591,842 to 594,740 10980 mRNA_2613: 10981 - K00223 ERG4 Delta24(24(1))-sterol reductase, at 594,980 to 596,945 10981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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590,845 - -1.0
590,848 + +1.3
590,861 + +0.6
590,869 + -1.2
590,888 - -0.6
591,000 + -0.1
591,002 + -0.6
591,134 + -0.1
591,150 - +1.3
591,345 - 10979 mRNA_2611 0.11 +0.2
591,453 + 10979 mRNA_2611 0.37 +0.2
592,171 + 10980 mRNA_2612 0.11 -1.4
592,304 - 10980 mRNA_2612 0.16 +0.3
592,306 + 10980 mRNA_2612 0.16 +0.0
592,327 - 10980 mRNA_2612 0.17 +1.6
592,328 + 10980 mRNA_2612 0.17 +0.8
592,934 - 10980 mRNA_2612 0.38 +0.3
593,067 + 10980 mRNA_2612 0.42 -0.3
593,350 - 10980 mRNA_2612 0.52 -0.1
593,395 - 10980 mRNA_2612 0.54 -0.2
593,962 - 10980 mRNA_2612 0.73 -1.1
594,349 - 10980 mRNA_2612 0.86 -0.5
594,359 + 10980 mRNA_2612 0.87 -0.4
594,373 + 10980 mRNA_2612 0.87 -2.1
594,385 - 10980 mRNA_2612 0.88 -3.1
594,538 - +1.0
594,644 - -0.9
594,800 + +0.1
594,806 + -0.6
594,812 - +0.3
594,957 - +0.2
594,968 + -0.2
594,972 - +0.3
595,260 + 10981 mRNA_2613 0.14 -0.1

Or see this region's nucleotide sequence