Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2618

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10985 and 10986 are separated by 101 nucleotides10986 and 10987 are separated by 482 nucleotides mRNA_2617: 10985 - HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056, at 605,466 to 606,411 10985 mRNA_2618: 10986 - Hypothetical Protein, at 606,513 to 607,761 10986 mRNA_2619: 10987 - Hypothetical Protein, at 608,244 to 608,759 10987

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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605,750 + 10985 mRNA_2617 0.30 +1.4
605,920 - 10985 mRNA_2617 0.48 +0.7
606,018 + 10985 mRNA_2617 0.58 -0.6
606,274 - 10985 mRNA_2617 0.85 +0.1
606,780 + 10986 mRNA_2618 0.21 +0.3
607,790 + -2.0
607,799 - +0.5
607,912 - +0.7
607,913 - -0.3
607,928 + -1.2
608,061 + -0.8
608,070 + -0.0
608,071 - -0.6
608,077 + -0.6
608,081 + +1.4
608,088 + -0.6
608,088 + -0.6
608,217 - -0.4
608,233 + -1.6
608,388 + 10987 mRNA_2619 0.28 -1.1
608,396 - 10987 mRNA_2619 0.29 +2.0
608,484 - 10987 mRNA_2619 0.47 -0.6
608,486 - 10987 mRNA_2619 0.47 -0.4
608,486 + 10987 mRNA_2619 0.47 +0.9
608,511 - 10987 mRNA_2619 0.52 +0.3
608,516 - 10987 mRNA_2619 0.53 +0.3
608,655 - 10987 mRNA_2619 0.80 +0.9
608,658 - 10987 mRNA_2619 0.80 -0.7
608,663 - 10987 mRNA_2619 0.81 -1.1
608,673 + 10987 mRNA_2619 0.83 -2.1
608,688 - 10987 mRNA_2619 0.86 +0.2

Or see this region's nucleotide sequence