Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2628

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10995 and 10996 are separated by 627 nucleotides10996 and 10997 are separated by 405 nucleotides mRNA_2627: 10995 - K05941 E2.3.2.15 glutathione gamma-glutamylcysteinyltransferase, at 624,250 to 625,308 10995 mRNA_2628: 10996 - K09468 MSN2_4 zinc finger protein MSN2/4, at 625,936 to 628,159 10996 mRNA_2629: 10997 - Hypothetical Protein, at 628,565 to 629,191 10997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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624,948 - 10995 mRNA_2627 0.66 +1.0
625,525 + -1.4
625,526 + -0.3
625,531 + +0.1
625,652 - -0.9
625,658 - +0.4
625,663 + +0.0
625,675 + +1.3
625,692 + +0.3
625,816 - +0.4
625,821 + +0.7
625,831 + -0.1
625,942 - -0.1
626,101 + +1.4
626,398 - 10996 mRNA_2628 0.21 +0.6
626,537 + 10996 mRNA_2628 0.27 +0.7
626,542 + 10996 mRNA_2628 0.27 -0.3
626,548 + 10996 mRNA_2628 0.28 -0.2
626,564 + 10996 mRNA_2628 0.28 +0.6
626,686 - 10996 mRNA_2628 0.34 +0.0
626,720 + 10996 mRNA_2628 0.35 -0.4
627,422 + 10996 mRNA_2628 0.67 +0.0
627,437 + 10996 mRNA_2628 0.67 -1.7
627,582 + 10996 mRNA_2628 0.74 -0.3
627,845 - 10996 mRNA_2628 0.86 -1.2
628,056 - -0.6
628,154 + +0.8
628,203 - -1.8
628,220 - +0.8
628,281 - +0.2
628,477 - -0.7
628,531 - -0.2
628,717 - 10997 mRNA_2629 0.24 -1.9
628,805 - 10997 mRNA_2629 0.38 -0.1
628,947 + 10997 mRNA_2629 0.61 -0.2
628,970 - 10997 mRNA_2629 0.65 +1.4
628,971 - 10997 mRNA_2629 0.65 +1.3
629,017 - 10997 mRNA_2629 0.72 +0.2
629,095 - 10997 mRNA_2629 0.85 -0.2
629,107 - 10997 mRNA_2629 0.86 +0.4
629,121 - 10997 mRNA_2629 0.89 -0.4
629,130 + -1.4
629,155 - -0.3

Or see this region's nucleotide sequence