Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2649

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2649: 11017 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 672,957 to 675,080 11017

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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672,228 - +0.3
672,230 + -0.2
672,232 - -0.1
672,233 - +1.0
672,235 - +0.0
672,245 + -0.2
672,246 + -0.4
672,364 - -1.3
672,706 - +0.6
672,787 + -0.5
673,263 + 11017 mRNA_2649 0.14 +0.1
673,379 + 11017 mRNA_2649 0.20 +0.2
673,402 - 11017 mRNA_2649 0.21 +0.5
673,685 + 11017 mRNA_2649 0.34 -0.2
673,698 + 11017 mRNA_2649 0.35 -0.5
673,744 + 11017 mRNA_2649 0.37 -0.1
673,840 - 11017 mRNA_2649 0.42 +1.4
673,898 + 11017 mRNA_2649 0.44 -0.2
673,952 - 11017 mRNA_2649 0.47 +0.8
674,144 - 11017 mRNA_2649 0.56 +0.1
674,173 + 11017 mRNA_2649 0.57 -0.0
674,210 - 11017 mRNA_2649 0.59 +0.3
674,315 - 11017 mRNA_2649 0.64 -0.7
674,438 - 11017 mRNA_2649 0.70 +1.1
674,462 + 11017 mRNA_2649 0.71 +0.4
674,582 + 11017 mRNA_2649 0.77 +1.0
674,593 - 11017 mRNA_2649 0.77 -0.2
675,011 - +0.0
675,020 - -0.9
675,145 - -0.6
675,445 - -0.4
675,479 - -0.2
675,483 + -0.6
675,487 + -0.3
675,511 - +0.3
675,596 - +0.1
675,605 + -0.2
675,608 + -0.2
675,615 - -1.8
675,618 - -0.1
675,629 - -0.1
675,630 - -0.6
675,630 + +0.7
675,640 + +1.7
675,642 - +0.3
675,649 - -0.4
675,652 - -0.8
675,652 - -1.6
675,654 + +0.9
675,654 + -0.0
675,655 - -0.5
675,659 + -0.3
675,659 + -0.9
675,659 + +0.4
675,659 + -0.1
675,695 - -0.4
675,695 - -0.1
675,709 + -0.5
675,744 - -0.9
675,967 + +0.6
675,970 + -0.6
675,987 + -0.2
675,990 - -0.2

Or see this region's nucleotide sequence