Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11054 and 11055 are separated by 595 nucleotides mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3,087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3,683 to 8,144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1 + -0.1
28 + -0.1
28 + -0.6
37 + +1.5
37 + -1.8
38 + +1.2
44 + -0.1
48 - +0.6
49 + +0.5
49 + +0.3
49 + -1.7
49 + +0.0
49 + -0.7
49 + -1.1
49 - -0.4
52 + +0.3
54 - -0.8
54 - +1.3
58 + -1.7
62 + -0.4
70 - -0.4
73 + -0.1
74 - +0.0
74 + -0.6
112 - -0.0
120 - +2.1
138 + +0.2
142 + +0.4
142 + +0.2
142 + -0.0
144 + -0.7
145 - +0.3
147 + +0.8
152 + -1.3
159 + +0.1
159 - -0.1
163 + +1.8
169 - +1.3
170 + -1.2
171 - +1.5
173 + -0.2
175 - -0.3
176 + +1.7
177 + -0.8
183 + +0.4
193 + -0.8
205 + -1.2
231 + +0.8
232 + -1.3
235 - +0.1
252 - +0.5
259 + +0.1
259 + +0.1
259 + -0.2
262 - -0.7
269 + +0.5
273 + +1.7
275 - -1.0
289 + +1.0
299 + -0.0
312 - -0.4
339 + +0.5
352 + +0.7
357 + -0.0
358 + +0.9
368 - -0.2
417 - +0.4
429 + +0.6
434 + +0.4
445 + -1.2
462 + +1.2
462 + -0.8
502 + +0.9
529 - -0.1
540 - -1.2
561 + +0.2
584 + +0.5
584 - +0.1
584 + +0.5
633 + -0.5
636 + -0.0
646 + -0.7
703 - +1.7
736 - -0.2
772 - 11054 mRNA_2686 0.10 +1.1
845 - 11054 mRNA_2686 0.13 -0.9
871 + 11054 mRNA_2686 0.14 -0.1
911 + 11054 mRNA_2686 0.16 -0.2
919 - 11054 mRNA_2686 0.16 -1.2
922 + 11054 mRNA_2686 0.16 -0.2
937 - 11054 mRNA_2686 0.17 -0.1
946 - 11054 mRNA_2686 0.17 -1.8
1,039 + 11054 mRNA_2686 0.21 -1.2
1,042 - 11054 mRNA_2686 0.21 -2.0
1,056 + 11054 mRNA_2686 0.21 -1.2
1,056 + 11054 mRNA_2686 0.21 +1.1
1,059 - 11054 mRNA_2686 0.21 -2.0
1,059 - 11054 mRNA_2686 0.21 +0.6
1,079 + 11054 mRNA_2686 0.22 -1.3
1,089 + 11054 mRNA_2686 0.22 +0.9
1,090 - 11054 mRNA_2686 0.22 +1.1
1,099 - 11054 mRNA_2686 0.23 -1.5
1,116 - 11054 mRNA_2686 0.24 +0.2
1,219 - 11054 mRNA_2686 0.28 +0.2
1,230 + 11054 mRNA_2686 0.28 +0.8
1,258 - 11054 mRNA_2686 0.29 +0.2
1,270 - 11054 mRNA_2686 0.29 +0.2
1,272 + 11054 mRNA_2686 0.30 -0.0
1,324 + 11054 mRNA_2686 0.32 -0.2
1,351 + 11054 mRNA_2686 0.33 +1.3
1,464 + 11054 mRNA_2686 0.37 -0.6
1,508 + 11054 mRNA_2686 0.39 -1.6
1,514 - 11054 mRNA_2686 0.39 +0.1
1,611 + 11054 mRNA_2686 0.43 -0.4
1,642 + 11054 mRNA_2686 0.44 -0.0
1,671 + 11054 mRNA_2686 0.45 -0.3
1,680 + 11054 mRNA_2686 0.45 -1.2
1,683 - 11054 mRNA_2686 0.46 -0.8
1,684 + 11054 mRNA_2686 0.46 -0.1
1,699 + 11054 mRNA_2686 0.46 -0.2
1,836 + 11054 mRNA_2686 0.51 -2.2
1,912 + 11054 mRNA_2686 0.54 +0.5
1,961 - 11054 mRNA_2686 0.56 -0.7
2,068 - 11054 mRNA_2686 0.60 -1.1
2,071 - 11054 mRNA_2686 0.61 -0.1
2,079 + 11054 mRNA_2686 0.61 -0.2
2,096 - 11054 mRNA_2686 0.62 -0.7
2,112 + 11054 mRNA_2686 0.62 +0.2
2,128 + 11054 mRNA_2686 0.63 -0.2
2,140 + 11054 mRNA_2686 0.63 +0.4
2,141 - 11054 mRNA_2686 0.63 -1.7
2,158 + 11054 mRNA_2686 0.64 -1.5
2,196 + 11054 mRNA_2686 0.65 +1.0
2,238 + 11054 mRNA_2686 0.67 -0.5
2,250 - 11054 mRNA_2686 0.67 +0.5
2,271 + 11054 mRNA_2686 0.68 +1.5
2,404 - 11054 mRNA_2686 0.73 -0.9
2,419 + 11054 mRNA_2686 0.74 -1.8
2,442 - 11054 mRNA_2686 0.75 -0.3
2,444 - 11054 mRNA_2686 0.75 +0.5
2,534 - 11054 mRNA_2686 0.79 -0.1
2,547 - 11054 mRNA_2686 0.79 +0.5
2,564 + 11054 mRNA_2686 0.80 +0.0
2,685 - 11054 mRNA_2686 0.84 +0.5
2,806 + 11054 mRNA_2686 0.89 -0.1
2,806 - 11054 mRNA_2686 0.89 -1.1
2,814 - 11054 mRNA_2686 0.89 -1.3
2,938 + -1.3
2,971 + -1.4
2,984 - +0.9
3,056 - +0.7
3,090 + -0.9
3,127 + -1.1
3,135 - +1.0
3,141 + -0.8
3,282 + -0.2
3,380 + -0.5
3,409 - -0.8

Or see this region's nucleotide sequence