Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2749

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11116 and 11117 are separated by 632 nucleotides11117 and 11118 are separated by 239 nucleotides mRNA_2748: 11116 - KOG3772 M-phase inducer phosphatase, at 131,237 to 131,877 11116 mRNA_2749: 11117 - K02146 ATPeV0D, ATP6D V-type H+-transporting ATPase subunit d, at 132,510 to 133,901 11117 mRNA_2750: 11118 - K14962 WDR82, SWD2, CPS35 COMPASS component SWD2, at 134,141 to 135,893 11118

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
131,846 + -1.8
131,870 - +1.4
132,017 - -2.4
132,020 + +0.4
132,023 - -0.2
132,041 + +0.5
132,181 + -0.2
133,825 - +0.4
133,912 + +0.8
133,967 - +0.4
134,050 - -0.2
134,136 + -0.4
134,163 - +2.2
134,180 - +0.7
134,316 - +0.2
134,545 + 11118 mRNA_2750 0.23 +0.0
134,784 + 11118 mRNA_2750 0.37 -0.4

Or see this region's nucleotide sequence