Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2769

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11136 and 11137 are separated by 223 nucleotides11137 and 11138 are separated by 342 nucleotides mRNA_2768: 11136 - K08681 pdxT, pdx2 5'-phosphate synthase pdxT subunit, at 170,479 to 171,341 11136 mRNA_2769: 11137 - K06215 pdxS, pdx1 pyridoxal 5'-phosphate synthase pdxS subunit, at 171,565 to 173,167 11137 mRNA_2770: 11138 - KOG0400 40S ribosomal protein S13, at 173,510 to 175,017 11138

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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170,669 - 11136 mRNA_2768 0.22 +0.5
170,811 - 11136 mRNA_2768 0.38 +0.2
170,952 + 11136 mRNA_2768 0.55 -0.3
170,988 + 11136 mRNA_2768 0.59 -1.8
171,119 - 11136 mRNA_2768 0.74 +0.3
171,267 - -0.3
171,300 + -0.8
171,440 - +1.1
171,444 - -1.6
171,478 + -0.1
171,644 + +0.5
171,646 + +0.2
171,647 - -1.3
171,669 - -0.9
171,778 + 11137 mRNA_2769 0.13 +0.6
171,787 - 11137 mRNA_2769 0.14 -0.7
171,920 - 11137 mRNA_2769 0.22 -0.3
171,928 + 11137 mRNA_2769 0.23 -0.2
172,075 + 11137 mRNA_2769 0.32 -0.4
172,216 + 11137 mRNA_2769 0.41 -0.8
172,216 - 11137 mRNA_2769 0.41 +0.2
172,217 + 11137 mRNA_2769 0.41 -0.2
172,389 + 11137 mRNA_2769 0.51 -0.4
172,477 - 11137 mRNA_2769 0.57 +0.2
172,514 + 11137 mRNA_2769 0.59 -1.2
172,527 - 11137 mRNA_2769 0.60 -0.5
172,530 + 11137 mRNA_2769 0.60 +1.0
172,661 - 11137 mRNA_2769 0.68 +0.2
172,670 - 11137 mRNA_2769 0.69 +0.1
172,702 + 11137 mRNA_2769 0.71 -0.6
172,706 + 11137 mRNA_2769 0.71 +0.0
172,706 - 11137 mRNA_2769 0.71 +1.1
172,722 - 11137 mRNA_2769 0.72 -1.4
172,723 + 11137 mRNA_2769 0.72 -0.4
172,790 - 11137 mRNA_2769 0.76 -0.8
172,816 + 11137 mRNA_2769 0.78 -0.9
172,817 - 11137 mRNA_2769 0.78 +1.3
172,825 - 11137 mRNA_2769 0.79 +0.3
172,827 + 11137 mRNA_2769 0.79 +0.2
172,834 - 11137 mRNA_2769 0.79 -0.4
172,899 - 11137 mRNA_2769 0.83 -0.5
172,921 - 11137 mRNA_2769 0.85 -0.7
172,969 - 11137 mRNA_2769 0.88 -0.6
172,976 - 11137 mRNA_2769 0.88 +0.4
172,978 + 11137 mRNA_2769 0.88 +1.0
172,979 + 11137 mRNA_2769 0.88 -0.9
173,102 - -1.2
173,198 + +2.6
173,234 - +1.0
173,570 - +1.3
174,062 - 11138 mRNA_2770 0.37 -0.8
174,127 + 11138 mRNA_2770 0.41 +0.3
174,165 + 11138 mRNA_2770 0.43 +0.3

Or see this region's nucleotide sequence