Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2791

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11158 and 11159 are separated by 161 nucleotides11159 and 11160 are separated by 296 nucleotides mRNA_2790: 11158 - Hypothetical Protein, at 219,629 to 222,406 11158 mRNA_2791: 11159 - K05544 DUS3 tRNA-dihydrouridine synthase 3, at 222,568 to 225,746 11159 mRNA_2792: 11160 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 226,043 to 228,012 11160

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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221,661 + 11158 mRNA_2790 0.73 -0.2
221,753 - 11158 mRNA_2790 0.76 -0.1
221,835 + 11158 mRNA_2790 0.79 +0.6
221,875 + 11158 mRNA_2790 0.81 +0.1
222,068 + 11158 mRNA_2790 0.88 +0.2
222,508 - -0.4
222,521 + -0.8
222,792 + -0.6
223,077 + 11159 mRNA_2791 0.16 -0.1
223,258 - 11159 mRNA_2791 0.22 -0.3
223,376 + 11159 mRNA_2791 0.25 -0.5
223,376 + 11159 mRNA_2791 0.25 -0.7
223,607 + 11159 mRNA_2791 0.33 +0.4
223,691 + 11159 mRNA_2791 0.35 +1.6
223,743 - 11159 mRNA_2791 0.37 -0.1
223,951 - 11159 mRNA_2791 0.44 +0.6
223,971 - 11159 mRNA_2791 0.44 +0.1
224,118 - 11159 mRNA_2791 0.49 -0.4
224,167 + 11159 mRNA_2791 0.50 -1.5
224,190 + 11159 mRNA_2791 0.51 -0.8
224,497 + 11159 mRNA_2791 0.61 -0.0
224,690 + 11159 mRNA_2791 0.67 +0.7
224,854 - 11159 mRNA_2791 0.72 -0.4
224,875 - 11159 mRNA_2791 0.73 -0.3
225,026 - 11159 mRNA_2791 0.77 +0.5
225,092 + 11159 mRNA_2791 0.79 -1.2
225,245 + 11159 mRNA_2791 0.84 -0.0
225,328 + 11159 mRNA_2791 0.87 +0.4
225,407 - 11159 mRNA_2791 0.89 +0.4
225,715 + +1.3
225,717 - -2.2
226,194 + -0.4
226,424 - 11160 mRNA_2792 0.19 -0.5
226,426 - 11160 mRNA_2792 0.19 -0.5
226,629 + 11160 mRNA_2792 0.30 -0.2
226,710 - 11160 mRNA_2792 0.34 +0.2
226,734 - 11160 mRNA_2792 0.35 +0.4

Or see this region's nucleotide sequence