Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2795

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11162 and 11163 are separated by 363 nucleotides11163 and 11164 are separated by 311 nucleotides mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230,035 to 232,978 11162 mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233,342 to 236,388 11163 mRNA_2796: 11164 - K08286 E2.7.11.- protein-serine/threonine kinase, at 236,700 to 240,335 11164

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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232,485 + 11162 mRNA_2794 0.83 +0.3
232,513 + 11162 mRNA_2794 0.84 +0.2
232,545 + 11162 mRNA_2794 0.85 +1.1
232,635 + 11162 mRNA_2794 0.88 -0.3
232,635 - 11162 mRNA_2794 0.88 -0.0
232,637 + 11162 mRNA_2794 0.88 -0.1
232,643 - 11162 mRNA_2794 0.89 +1.4
232,668 - 11162 mRNA_2794 0.89 -0.7
232,673 - 11162 mRNA_2794 0.90 +0.4
232,673 - 11162 mRNA_2794 0.90 -0.6
232,673 - 11162 mRNA_2794 0.90 -0.1
232,674 + 11162 mRNA_2794 0.90 -2.1
232,674 + 11162 mRNA_2794 0.90 -0.1
232,674 + 11162 mRNA_2794 0.90 +0.1
232,674 + 11162 mRNA_2794 0.90 +0.9
232,684 + -0.8
232,738 + +1.3
232,885 - -0.5
232,905 - +0.5
232,935 - -1.8
232,935 - +0.2
232,953 - -0.3
232,958 + -0.6
233,045 - -0.4
233,077 - -0.1
233,080 + +1.0
233,087 + -2.4
233,091 + -0.7
233,113 - +0.2
233,183 + -1.3
233,239 - -0.4
233,379 - +0.2
233,642 - -0.2
233,772 + 11163 mRNA_2795 0.14 -1.0
234,047 - 11163 mRNA_2795 0.23 -0.6
234,075 + 11163 mRNA_2795 0.24 -0.3
234,174 - 11163 mRNA_2795 0.27 -0.5
234,254 + 11163 mRNA_2795 0.30 -1.6
234,422 + 11163 mRNA_2795 0.35 -0.9
234,770 + 11163 mRNA_2795 0.47 -1.7
234,857 - 11163 mRNA_2795 0.50 -0.4
234,858 + 11163 mRNA_2795 0.50 -0.6
234,942 + 11163 mRNA_2795 0.53 +0.5
235,289 + 11163 mRNA_2795 0.64 +0.5
235,418 - 11163 mRNA_2795 0.68 +0.4
235,679 - 11163 mRNA_2795 0.77 -0.8
235,693 - 11163 mRNA_2795 0.77 -0.1
235,694 - 11163 mRNA_2795 0.77 -0.1
235,713 + 11163 mRNA_2795 0.78 +0.7
235,775 + 11163 mRNA_2795 0.80 +0.8
235,822 + 11163 mRNA_2795 0.81 -1.2
235,860 + 11163 mRNA_2795 0.83 -2.9
236,129 + -0.9
236,291 + -0.0
236,302 - -0.8
236,326 + +1.8
236,487 + -0.9
236,589 + -0.1
236,604 + -0.3
236,621 - -0.1

Or see this region's nucleotide sequence