Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2807

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11175 and 11176 are separated by 334 nucleotides mRNA_2807: 11175 - K11485 MTF2, PCL2 polycomb-like protein 2, at 267,312 to 269,571 11175 mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269,906 to 271,117 11176

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
266,432 - +0.2
266,704 - -0.2
266,999 + -0.4
267,533 + -0.4
267,559 - 11175 mRNA_2807 0.11 -1.3
267,573 - 11175 mRNA_2807 0.12 -0.9
268,025 - 11175 mRNA_2807 0.32 +0.2
268,142 - 11175 mRNA_2807 0.37 -1.6
268,322 + 11175 mRNA_2807 0.45 +0.0
268,576 + 11175 mRNA_2807 0.56 -0.5
268,580 + 11175 mRNA_2807 0.56 -0.7
268,592 + 11175 mRNA_2807 0.57 -0.3
268,693 - 11175 mRNA_2807 0.61 +0.6
268,744 - 11175 mRNA_2807 0.63 -0.0
268,890 - 11175 mRNA_2807 0.70 +0.0
269,167 + 11175 mRNA_2807 0.82 -0.2
269,190 + 11175 mRNA_2807 0.83 -0.5
269,315 + 11175 mRNA_2807 0.89 -0.6
269,330 + 11175 mRNA_2807 0.89 -0.1
269,456 + -0.6
269,480 - -1.5
269,489 - +0.6
269,603 - -0.3
269,734 + +0.7
269,759 + -0.2
269,822 + +0.0
269,876 - -0.5
269,879 - +1.1
269,910 + +0.0
269,913 - +0.0
270,045 - 11176 mRNA_2808 0.11 +0.5
270,182 + 11176 mRNA_2808 0.23 -0.1
270,184 - 11176 mRNA_2808 0.23 -2.1
270,206 - 11176 mRNA_2808 0.25 +1.5
270,469 + 11176 mRNA_2808 0.46 -0.1

Or see this region's nucleotide sequence