Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2921

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11288 and 11289 are separated by 408 nucleotides mRNA_2920: 11288 - KOG2234 Predicted UDP-galactose transporter, at 558,435 to 560,436 11288 mRNA_2921: 11289 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 560,845 to 562,189 11289

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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559,895 + 11288 mRNA_2920 0.73 +1.0
560,191 + 11288 mRNA_2920 0.88 -1.0
560,339 - -0.5
560,623 - -0.2
560,628 - +0.3
560,657 - -0.4
560,965 + -0.6
560,990 + 11289 mRNA_2921 0.11 -1.4
561,205 + 11289 mRNA_2921 0.27 -0.1
561,241 + 11289 mRNA_2921 0.29 +0.1
561,330 - 11289 mRNA_2921 0.36 +0.1
561,395 + 11289 mRNA_2921 0.41 -0.1
561,674 - 11289 mRNA_2921 0.62 +0.9
562,398 - -0.3
562,419 - -0.3
562,527 + +0.1
562,530 + +0.5
562,534 - +0.4
562,601 - -1.3
562,603 + +0.2
562,644 - +2.1
562,665 + -1.2
562,705 - +2.5
562,839 + -0.2
562,841 - +0.4
562,852 + +0.6
562,854 + -0.0
562,875 + +0.2
562,882 - +0.4
562,891 + -0.0
562,994 + +0.4
563,000 + -0.8
563,090 - +0.1
563,126 + -0.4
563,150 + -0.5
563,178 + +0.0

Or see this region's nucleotide sequence