Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2922

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11290 and 11291 are separated by 276 nucleotides mRNA_2922: 11290 - K10807 RRM1 ribonucleoside-diphosphate reductase subunit M1, at 564,601 to 568,377 11290 mRNA_2923: 11291 - Hypothetical Protein, at 568,654 to 569,537 11291

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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563,686 - -0.9
563,709 - +0.1
564,002 - +0.3
564,126 + -0.6
564,301 + -0.9
564,315 - +0.2
564,316 + +0.6
564,329 - -0.7
564,367 + -0.2
564,373 - -0.4
564,379 + -0.5
564,379 + -1.6
564,391 + +1.3
564,406 + +0.3
564,418 + -2.1
564,442 + -1.5
564,447 + -0.1
564,449 - +1.1
564,454 + -0.0
564,459 + -0.9
564,460 - +0.1
564,466 + +0.3
564,468 + +0.8
564,472 - -0.3
564,479 - +0.2
564,481 + -0.4
564,497 + +1.0
568,419 + +0.3
568,749 + 11291 mRNA_2923 0.11 -1.4
568,772 + 11291 mRNA_2923 0.13 -0.3
568,783 + 11291 mRNA_2923 0.15 +1.1
568,890 - 11291 mRNA_2923 0.27 -0.2
569,048 + 11291 mRNA_2923 0.45 +0.4

Or see this region's nucleotide sequence