Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2924

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11291 and 11292 are separated by 242 nucleotides11292 and 11293 are separated by 436 nucleotides mRNA_2923: 11291 - Hypothetical Protein, at 568,654 to 569,537 11291 mRNA_2924: 11292 - K11663 ZNHIT1, VPS71 zinc finger HIT domain-containing protein 1, at 569,780 to 570,412 11292 mRNA_2925: 11293 - K03030 PSMD14, RPN11, POH1 26S proteasome regulatory subunit N11, at 570,849 to 571,975 11293

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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568,783 + 11291 mRNA_2923 0.15 +1.1
568,890 - 11291 mRNA_2923 0.27 -0.2
569,048 + 11291 mRNA_2923 0.45 +0.4
569,628 - +0.5
569,738 + -0.4
569,754 + +1.1
570,474 + -0.2
570,518 + -0.9
570,518 + -0.4

Or see this region's nucleotide sequence