Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3049

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11416 and 11417 are separated by 285 nucleotides11417 and 11418 are separated by 374 nucleotides mRNA_3048: 11416 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 188,658 to 190,471 11416 mRNA_3049: 11417 - SUPERFAMILY--SSF50685, at 190,757 to 193,605 11417 mRNA_3050: 11418 - K14430 PHO87_91 phosphate transporter, at 193,980 to 198,261 11418

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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189,898 - 11416 mRNA_3048 0.68 +0.4
189,915 - 11416 mRNA_3048 0.69 -0.4
190,044 + 11416 mRNA_3048 0.76 -0.7
190,076 + 11416 mRNA_3048 0.78 -0.6
190,096 - 11416 mRNA_3048 0.79 -0.1
190,388 - +0.0
190,390 - -0.2
190,585 - -0.0

Or see this region's nucleotide sequence