Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3058

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11425 and 11426 are separated by 300 nucleotides mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214,961 to 216,563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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213,989 - 11425 mRNA_3057 0.72 -0.2
213,994 + 11425 mRNA_3057 0.72 -0.9
214,072 + 11425 mRNA_3057 0.75 -0.3
214,224 - 11425 mRNA_3057 0.82 +0.3
214,238 - 11425 mRNA_3057 0.82 +0.2
214,243 + 11425 mRNA_3057 0.83 -0.3
214,523 + -0.6
214,665 + -1.0
214,696 + +0.2
214,932 + +0.4
214,987 + +0.6
214,988 + -1.7
215,019 + +0.1
215,262 - 11426 mRNA_3058 0.19 +0.0
215,363 - 11426 mRNA_3058 0.25 -0.2
215,509 + 11426 mRNA_3058 0.34 +0.1
215,589 - 11426 mRNA_3058 0.39 +2.3
215,589 - 11426 mRNA_3058 0.39 -0.1
215,589 - 11426 mRNA_3058 0.39 +0.1
215,589 - 11426 mRNA_3058 0.39 -0.9
215,595 + 11426 mRNA_3058 0.40 -0.1
215,643 + 11426 mRNA_3058 0.43 -0.0
215,766 + 11426 mRNA_3058 0.50 -1.6
215,766 - 11426 mRNA_3058 0.50 -0.7
215,839 - 11426 mRNA_3058 0.55 -0.6
215,842 - 11426 mRNA_3058 0.55 -0.5
215,866 + 11426 mRNA_3058 0.56 -0.7
215,905 - 11426 mRNA_3058 0.59 +0.3
216,117 + 11426 mRNA_3058 0.72 -0.1
216,133 - 11426 mRNA_3058 0.73 +1.6
216,179 - 11426 mRNA_3058 0.76 -0.7
216,189 - 11426 mRNA_3058 0.77 +0.1
216,191 - 11426 mRNA_3058 0.77 +0.4
216,234 - 11426 mRNA_3058 0.79 -0.2
216,271 - 11426 mRNA_3058 0.82 +0.8
216,345 - 11426 mRNA_3058 0.86 -0.4
216,395 - 11426 mRNA_3058 0.89 +0.3
216,443 + -1.7
216,446 - -0.0
216,449 + +0.0
216,569 + -0.8
216,570 + -0.5
216,674 + -0.8
216,742 + -0.1
216,837 - +1.8
216,865 - -0.2
216,868 - -0.6
216,879 + -0.4
216,882 + +0.0
216,884 - -0.2
217,004 + -1.3
217,009 - -0.4
217,011 - -0.2
217,029 - -1.4
217,032 + +0.1
217,035 - -1.2
217,037 + +0.4
217,038 + -2.3
217,045 - -0.4
217,152 - +1.6
217,173 + +0.6
217,193 + -0.1
217,252 - -0.6
217,317 + -1.2
217,461 - -2.0
217,464 + +0.4
217,470 - +0.2
217,470 - -0.0
217,475 + +0.3

Or see this region's nucleotide sequence