Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3083

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11451 and 11452 are separated by 123 nucleotides mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312 11452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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280,042 - +0.1
280,045 + +1.3
280,046 + -0.8
280,053 + -1.2
280,122 + -0.8
280,142 + -0.2
280,143 - -0.2
280,146 + +0.3
280,149 - +0.3
280,149 - +1.1
280,160 + +1.4
280,161 - -0.1
280,163 - -0.1
280,166 - +1.1
280,166 - +0.6
280,169 - -0.2
280,173 + +0.4
280,175 + -0.9
280,178 - +0.6
280,179 - -1.2
280,180 + +0.0
280,182 - +1.0
280,185 + -0.2
280,188 + +0.3
280,190 - -1.0
280,193 - +0.1
280,207 - +0.1
280,213 - -0.3
280,330 - -1.2
280,331 + -1.1
280,344 - -0.4
280,357 + -0.0
280,419 + +0.4
280,462 - -1.2
280,463 - +0.1
280,481 - -0.5
280,495 + +0.5
280,496 + -1.8
280,509 + -1.4
280,624 - -0.6
280,632 + -1.4
280,638 - -0.4
280,668 + +0.0
280,749 + -0.7
280,769 + +0.7
280,795 + -0.5
280,834 + +0.0
280,955 - +0.3
280,959 - +0.3
280,964 + +1.9
281,058 + -0.6
281,065 - -0.9
281,077 - -0.7
281,204 + -0.7
281,356 + 11451 mRNA_3083 0.18 -1.6
281,372 + 11451 mRNA_3083 0.19 -1.3
281,442 - 11451 mRNA_3083 0.23 -0.1
281,490 + 11451 mRNA_3083 0.25 -0.8
281,522 - 11451 mRNA_3083 0.27 +1.5
281,564 - 11451 mRNA_3083 0.29 -0.4
281,628 - 11451 mRNA_3083 0.33 -0.6
281,634 - 11451 mRNA_3083 0.33 -0.6
281,659 + 11451 mRNA_3083 0.34 -0.1
281,662 + 11451 mRNA_3083 0.35 +0.3
281,690 + 11451 mRNA_3083 0.36 -0.7
281,833 - 11451 mRNA_3083 0.44 +0.4
281,850 - 11451 mRNA_3083 0.45 +0.5
281,880 - 11451 mRNA_3083 0.46 +0.1
281,883 - 11451 mRNA_3083 0.47 -0.2
281,900 - 11451 mRNA_3083 0.47 +1.0
281,907 - 11451 mRNA_3083 0.48 -0.2
281,919 + 11451 mRNA_3083 0.49 +0.2
281,919 - 11451 mRNA_3083 0.49 -0.3
281,921 + 11451 mRNA_3083 0.49 -0.2
281,940 + 11451 mRNA_3083 0.50 -0.5
281,970 - 11451 mRNA_3083 0.51 +0.2
281,987 - 11451 mRNA_3083 0.52 -0.5
282,014 + 11451 mRNA_3083 0.54 -0.8
282,020 - 11451 mRNA_3083 0.54 +0.1
282,021 - 11451 mRNA_3083 0.54 +0.1
282,021 + 11451 mRNA_3083 0.54 -0.2
282,024 - 11451 mRNA_3083 0.54 -0.4
282,026 - 11451 mRNA_3083 0.54 -0.4
282,026 + 11451 mRNA_3083 0.54 +0.8
282,035 - 11451 mRNA_3083 0.55 -0.7
282,037 - 11451 mRNA_3083 0.55 +0.8
282,041 - 11451 mRNA_3083 0.55 +0.2
282,042 + 11451 mRNA_3083 0.55 -3.2
282,045 - 11451 mRNA_3083 0.55 -0.1
282,050 + 11451 mRNA_3083 0.56 +0.2
282,059 + 11451 mRNA_3083 0.56 -1.2
282,071 - 11451 mRNA_3083 0.57 -0.5
282,072 - 11451 mRNA_3083 0.57 -0.4
282,079 - 11451 mRNA_3083 0.57 -0.9
282,082 + 11451 mRNA_3083 0.57 -0.4
282,085 - 11451 mRNA_3083 0.58 +0.5
282,087 - 11451 mRNA_3083 0.58 -0.6
282,087 + 11451 mRNA_3083 0.58 -0.6
282,088 + 11451 mRNA_3083 0.58 -0.5
282,089 - 11451 mRNA_3083 0.58 -0.2
282,093 + 11451 mRNA_3083 0.58 -0.1
282,093 + 11451 mRNA_3083 0.58 +0.1
282,100 - 11451 mRNA_3083 0.58 -0.0
282,101 + 11451 mRNA_3083 0.58 -0.8
282,106 + 11451 mRNA_3083 0.59 +0.4
282,109 + 11451 mRNA_3083 0.59 -0.2
282,117 + 11451 mRNA_3083 0.59 -0.3
282,132 - 11451 mRNA_3083 0.60 -0.1
282,136 + 11451 mRNA_3083 0.60 -1.7
282,136 + 11451 mRNA_3083 0.60 +0.6
282,137 - 11451 mRNA_3083 0.60 +0.4
282,142 + 11451 mRNA_3083 0.61 +0.2
282,143 + 11451 mRNA_3083 0.61 +0.4
282,145 - 11451 mRNA_3083 0.61 +0.3
282,168 - 11451 mRNA_3083 0.62 -1.5
282,169 - 11451 mRNA_3083 0.62 -0.0
282,187 - 11451 mRNA_3083 0.63 +0.9
282,201 - 11451 mRNA_3083 0.64 -0.6
282,209 - 11451 mRNA_3083 0.64 +0.6
282,233 - 11451 mRNA_3083 0.66 -0.8
282,241 + 11451 mRNA_3083 0.66 -0.6
282,251 - 11451 mRNA_3083 0.67 -0.1
282,260 - 11451 mRNA_3083 0.67 -0.2
282,338 - 11451 mRNA_3083 0.71 -2.4
282,338 + 11451 mRNA_3083 0.71 -0.5
282,340 + 11451 mRNA_3083 0.71 -1.0
282,359 + 11451 mRNA_3083 0.72 +0.1
282,367 - 11451 mRNA_3083 0.73 -0.7
282,367 - 11451 mRNA_3083 0.73 -0.3
282,379 - 11451 mRNA_3083 0.74 -0.2
282,379 - 11451 mRNA_3083 0.74 -0.3
282,385 + 11451 mRNA_3083 0.74 -0.5
282,392 + 11451 mRNA_3083 0.74 -0.7
282,411 + 11451 mRNA_3083 0.75 +1.5
282,412 + 11451 mRNA_3083 0.75 -0.6
282,412 + 11451 mRNA_3083 0.75 +0.4
282,418 + 11451 mRNA_3083 0.76 -2.1
282,419 + 11451 mRNA_3083 0.76 +0.0
282,424 + 11451 mRNA_3083 0.76 -2.3
282,424 + 11451 mRNA_3083 0.76 +0.9
282,429 - 11451 mRNA_3083 0.76 -1.1
282,452 + 11451 mRNA_3083 0.78 +0.3
282,456 + 11451 mRNA_3083 0.78 -0.3
282,457 + 11451 mRNA_3083 0.78 -0.9
282,469 + 11451 mRNA_3083 0.78 +0.4
282,482 + 11451 mRNA_3083 0.79 -0.2
282,486 - 11451 mRNA_3083 0.79 -0.4
282,540 - 11451 mRNA_3083 0.82 -0.8
282,545 - 11451 mRNA_3083 0.83 -0.5
282,552 + 11451 mRNA_3083 0.83 +0.0
282,601 + 11451 mRNA_3083 0.86 +0.0
282,616 - 11451 mRNA_3083 0.86 +0.2
282,634 + 11451 mRNA_3083 0.87 +0.2
282,642 - 11451 mRNA_3083 0.88 -0.8
282,681 - 11451 mRNA_3083 0.90 -0.3
282,694 + +0.4
282,707 - -0.5
282,709 - -0.4
282,709 + +0.3
282,712 - +0.3
282,713 + -0.5
282,718 - -1.6
282,733 - +0.2
282,758 + -0.2
282,761 + -0.6
282,779 + +0.3
282,784 + +0.0
282,861 - +0.1
282,864 - +0.0
282,866 - -0.8
282,906 - -2.0
282,909 + +0.1
282,947 - -1.6
282,953 + -1.2
282,962 - +1.4
282,968 + -0.2
282,995 + +0.1
283,012 - +0.6
283,022 + 11452 mRNA_3084 0.10 -1.2
283,043 - 11452 mRNA_3084 0.17 -0.1
283,073 + 11452 mRNA_3084 0.26 +0.4
283,099 + 11452 mRNA_3084 0.34 -0.4
283,099 + 11452 mRNA_3084 0.34 +1.4
283,102 - 11452 mRNA_3084 0.35 -1.0
283,114 + 11452 mRNA_3084 0.39 -2.4
283,149 + 11452 mRNA_3084 0.49 +0.2
283,241 - 11452 mRNA_3084 0.78 -1.3
283,251 - 11452 mRNA_3084 0.81 -0.9
283,252 + 11452 mRNA_3084 0.81 +0.1
283,271 + 11452 mRNA_3084 0.87 -0.5
283,272 + 11452 mRNA_3084 0.87 -1.2
283,419 - -0.4
283,531 + +0.8
283,534 + +0.5
283,545 + -0.1
283,545 + -2.5
283,547 - -0.6
283,563 + -1.4
283,580 + -0.7
283,710 + -0.0
283,826 - -0.0
283,827 + -0.1
283,844 + +0.1
283,854 + -0.5
283,858 + +0.3
283,858 + +0.2
283,860 - +0.6
283,861 + -0.4
283,863 - -1.2
283,864 + -0.2
283,865 + -0.4

Or see this region's nucleotide sequence