Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3094

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11461 and 11462 are separated by 328 nucleotides11462 and 11463 are separated by 232 nucleotides mRNA_3093: 11461 - Hypothetical Protein, at 304,363 to 305,282 11461 mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305,611 to 307,227 11462 mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307,460 to 310,020 11463

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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304,687 - 11461 mRNA_3093 0.35 -0.8
304,695 + 11461 mRNA_3093 0.36 +0.1
304,753 + 11461 mRNA_3093 0.42 +0.3
304,926 - 11461 mRNA_3093 0.61 -0.4
304,959 + 11461 mRNA_3093 0.65 +1.2
304,999 + 11461 mRNA_3093 0.69 -1.0
305,056 - 11461 mRNA_3093 0.75 +0.1
305,060 - 11461 mRNA_3093 0.76 +0.0
305,077 - 11461 mRNA_3093 0.78 +0.1
305,208 + -0.9
305,211 - +1.6
305,219 + -0.6
305,223 + -0.5
305,339 - -0.0
305,364 + -0.6
305,365 + +1.1
305,367 + +0.9
305,369 + -0.5
305,376 - +0.4
305,377 + -0.3
305,378 - +0.1
305,381 - +0.9
305,381 - -0.6
305,470 + +0.7
305,481 - -2.3
305,483 + -0.6
305,492 + -0.8
305,492 + -1.5
305,508 + -2.0
305,508 - -0.4
305,512 - -2.3
305,513 - -1.5
305,516 - -0.9
305,516 + +1.4
305,520 - -0.2
305,522 + -1.5
305,524 - +0.0
305,535 - -0.2
305,542 + -0.3
305,562 - -0.3
305,628 + -1.4
305,636 - -1.0
305,660 - +0.1
305,664 - -1.1
305,680 + +1.1
305,683 - -1.0
305,687 + -0.3
305,694 - -1.0
305,725 - -0.5
305,797 - 11462 mRNA_3094 0.12 -2.4
305,803 - 11462 mRNA_3094 0.12 +0.1
305,816 + 11462 mRNA_3094 0.13 +0.2
305,834 - 11462 mRNA_3094 0.14 +0.3
305,847 + 11462 mRNA_3094 0.15 +0.4
305,848 + 11462 mRNA_3094 0.15 -0.8
305,876 - 11462 mRNA_3094 0.16 +0.1
305,931 - 11462 mRNA_3094 0.20 +1.6
305,979 + 11462 mRNA_3094 0.23 -1.4
305,989 + 11462 mRNA_3094 0.23 -0.9
306,002 - 11462 mRNA_3094 0.24 -1.1
306,112 + 11462 mRNA_3094 0.31 -0.4
306,128 + 11462 mRNA_3094 0.32 -0.3
306,252 - 11462 mRNA_3094 0.40 -0.4
306,353 + 11462 mRNA_3094 0.46 -0.8
306,724 + 11462 mRNA_3094 0.69 +0.2
306,852 - 11462 mRNA_3094 0.77 -0.3
306,857 - 11462 mRNA_3094 0.77 +0.4
306,973 - 11462 mRNA_3094 0.84 -2.9
307,007 - 11462 mRNA_3094 0.86 +0.5
307,139 - +0.0
307,145 + -0.5
307,151 + -0.9
307,152 - +0.0
307,259 - +0.7
307,268 - -0.8
307,269 + -1.4
307,271 + -0.1
307,273 - -0.4
307,273 - -0.1
307,274 + -0.1
307,278 + -0.6
307,281 + -1.0
307,284 - +0.8
307,288 + +0.2
307,290 + -0.3
307,294 + -2.2
307,294 + +0.1
307,294 - -0.7
307,297 + -0.4
307,297 - +0.7
307,300 + +1.1
307,302 + -0.3
307,303 - -0.3
307,304 + +0.0
307,305 + -0.1
307,305 + -1.2
307,308 - +0.2
307,312 - -0.5
307,326 + -0.9
307,332 + +0.1
307,333 + -0.5
307,336 - -1.5
307,344 + +0.8
307,353 + +0.6
307,408 + +0.9
307,449 + +1.9
307,475 - -0.5
307,621 - -0.4
307,728 - 11463 mRNA_3095 0.10 -0.5
307,765 - 11463 mRNA_3095 0.12 -0.5
307,774 + 11463 mRNA_3095 0.12 +1.2
307,776 + 11463 mRNA_3095 0.12 -1.3
307,780 - 11463 mRNA_3095 0.12 +0.6
307,781 + 11463 mRNA_3095 0.13 -0.1
307,902 - 11463 mRNA_3095 0.17 -0.4
308,226 - 11463 mRNA_3095 0.30 -0.3

Or see this region's nucleotide sequence