Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3105

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11473 and 11474 are separated by 151 nucleotides mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334,494 to 336,059 11473 mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336,211 to 338,758 11474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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333,499 - -0.1
333,500 + +0.6
333,501 + +0.1
333,501 + -0.2
333,502 + -2.6
333,514 + -0.8
333,516 - -1.2
333,518 - -0.5
333,519 + +0.2
333,520 + +0.3
333,523 - +0.3
333,523 + +0.0
333,532 - -1.4
333,537 + +0.8
333,554 - -0.6
333,582 + +0.4
333,646 - -0.2
333,648 - +1.7
333,653 + +0.0
333,657 + +0.2
333,657 + +0.3
333,662 + +0.2
333,663 - -0.2
333,663 - -0.6
333,664 - -0.1
333,664 + -0.5
333,665 + +1.1
333,666 - -0.6
333,667 - +0.3
333,674 - -3.4
333,675 - -0.1
333,676 - +0.2
333,676 + +0.4
333,676 + +0.6
333,681 - -0.6
333,705 + -1.1
333,706 - +0.0
333,706 - -0.2
333,706 - +1.0
333,706 - -1.0
333,707 - +0.1
333,708 - +0.3
333,708 - -0.4
333,708 - -0.2
333,718 + +0.2
333,718 - +1.6
333,720 - -0.3
333,729 - +1.4
333,730 - +0.6
333,733 - +1.2
333,735 + +0.4
333,749 + +0.8
333,754 - -1.2
333,767 - -1.2
333,768 + -0.2
333,783 + +1.2
333,788 + -0.1
333,798 + -0.1
333,843 + +0.5
333,889 - +0.6
333,889 - -0.3
333,905 - -0.5
333,905 - -0.4
333,906 + -0.5
333,910 - -0.6
333,914 - +0.2
333,915 + -0.6
333,920 + -1.3
333,923 + -1.7
333,925 - -0.4
333,929 + +0.2
333,968 + +0.0
334,021 + -0.2
334,045 - -0.3
334,073 + -0.4
334,086 - -0.6
334,088 + -0.2
334,089 + -0.8
334,107 + +0.8
334,117 + -0.7
334,195 - -0.2
334,207 - +0.0
334,214 - +0.3
334,214 - -0.2
334,217 - -0.8
334,225 + -0.0
334,227 + -0.7
334,228 + -0.3
334,234 - +0.5
334,246 - +0.0
334,248 - -1.2
334,249 + -0.3
334,253 - -1.8
334,259 + +0.8
334,380 + -0.5
334,392 - -0.2
334,427 + +0.2
334,519 - +0.1
334,521 - -0.3
334,523 - +0.7
334,526 + -0.7
334,552 + -0.6
334,555 + -1.5
334,835 + 11473 mRNA_3105 0.22 -0.4
334,970 + 11473 mRNA_3105 0.30 +1.6
334,970 - 11473 mRNA_3105 0.30 +0.0
334,983 - 11473 mRNA_3105 0.31 -0.8
335,142 - 11473 mRNA_3105 0.41 -1.2
335,163 - 11473 mRNA_3105 0.43 -0.3
335,744 + 11473 mRNA_3105 0.80 -0.4
335,862 - 11473 mRNA_3105 0.87 +0.2
336,033 + -0.3
336,033 - +0.3
336,034 - -0.2
336,036 + +0.7
336,061 - -1.4
336,077 + -0.1
336,140 - -0.8
336,147 - +1.2
336,159 - -1.2
336,161 - -1.3
336,170 - +1.1
336,173 + +1.3
336,175 - -0.3
336,178 + -0.9
336,187 - -1.0
336,190 + +0.4
336,198 + -0.0
336,205 - +0.1
336,205 + +0.1
336,312 - -0.4
336,323 + +0.4
336,327 + -0.8
336,329 + -0.4
336,341 - +1.8
336,345 + -0.7
336,457 - -0.3
336,459 + -0.5
336,481 - 11474 mRNA_3106 0.11 +1.0
336,485 + 11474 mRNA_3106 0.11 -0.6
336,491 - 11474 mRNA_3106 0.11 -0.0
336,634 - 11474 mRNA_3106 0.17 +0.9
336,639 + 11474 mRNA_3106 0.17 -0.6
336,648 - 11474 mRNA_3106 0.17 +0.7
336,649 - 11474 mRNA_3106 0.17 -1.3
336,775 + 11474 mRNA_3106 0.22 -0.5
336,787 - 11474 mRNA_3106 0.23 -0.7
336,935 + 11474 mRNA_3106 0.28 -0.7

Or see this region's nucleotide sequence