Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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12 + +0.4
12 + -0.1
15 + -0.6
16 + +0.3
18 + -0.4
22 + -0.6
25 + +0.9
57 - -1.3
61 - +1.5
62 + -0.5
62 + -0.1
66 + -0.0
72 + -0.2
72 + -1.0
72 + -0.9
75 + -1.2
78 - -1.4
105 + +0.1
110 - -0.9
114 + -0.1
115 + -0.2
118 + -0.4
122 + -0.6
122 - -1.0
124 + -0.3
135 + +1.6
147 + -0.9
157 + +0.2
161 + +0.2
168 + -1.5
174 + -1.1
177 - -1.3
228 + +0.6
247 + -0.9
252 - +1.2
253 - +0.7
255 + +0.4
258 + -1.2
264 - -0.5
269 + +0.1
269 - -0.1
274 + +0.0
275 - -1.0
277 + -0.0
280 + +1.2
280 + +1.1
283 - +0.1
285 - +0.1
287 + -0.7
287 + -0.3
288 + -1.7
292 - -0.8
293 + -0.5
298 + +2.1
305 - +0.0
314 + -0.1
320 + +1.1
368 + -0.2
370 - +0.0
372 + -0.4
382 + +1.1
384 + +0.3
391 + +1.3
391 - +0.4
397 + -0.5
397 - -0.2
402 + -1.9
405 + +0.6
423 - -0.1
430 + -0.3
440 + -1.4
446 + -0.7
470 + -1.3
524 + +0.8
532 + -0.4
545 - -1.1
557 + -0.5
569 + -0.5
570 - -0.8
583 + +0.1
584 + -0.0
603 - +0.5
603 + +0.6
634 - 11537 mRNA_3169 0.11 -0.2
636 + 11537 mRNA_3169 0.11 +0.0
646 + 11537 mRNA_3169 0.12 +0.3
661 + 11537 mRNA_3169 0.13 -0.1
667 + 11537 mRNA_3169 0.14 +1.1
698 + 11537 mRNA_3169 0.17 -0.2
704 - 11537 mRNA_3169 0.18 -0.5
705 - 11537 mRNA_3169 0.18 +0.3
721 - 11537 mRNA_3169 0.19 -0.5
725 + 11537 mRNA_3169 0.20 -0.7
738 - 11537 mRNA_3169 0.21 -0.6
849 + 11537 mRNA_3169 0.32 -0.1
871 + 11537 mRNA_3169 0.34 -0.3
883 + 11537 mRNA_3169 0.35 +1.8
894 + 11537 mRNA_3169 0.37 -0.6
895 + 11537 mRNA_3169 0.37 -0.1
922 + 11537 mRNA_3169 0.39 +1.8
965 - 11537 mRNA_3169 0.44 -0.3
1,012 - 11537 mRNA_3169 0.48 -0.9
1,026 + 11537 mRNA_3169 0.50 +0.2
1,026 + 11537 mRNA_3169 0.50 +0.5
1,105 + 11537 mRNA_3169 0.58 -0.1
1,123 + 11537 mRNA_3169 0.60 -1.2
1,141 + 11537 mRNA_3169 0.61 +0.1
1,142 + 11537 mRNA_3169 0.61 -0.2
1,165 + 11537 mRNA_3169 0.64 -0.4
1,174 - 11537 mRNA_3169 0.65 +1.0
1,174 + 11537 mRNA_3169 0.65 +0.4
1,259 + 11537 mRNA_3169 0.73 -1.0
1,265 + 11537 mRNA_3169 0.74 +0.1
1,268 + 11537 mRNA_3169 0.74 +0.0
1,269 - 11537 mRNA_3169 0.74 +0.0
1,288 - 11537 mRNA_3169 0.76 -1.4
1,297 + 11537 mRNA_3169 0.77 -0.4
1,303 - 11537 mRNA_3169 0.78 -0.3
1,399 + 11537 mRNA_3169 0.87 +0.7
1,412 - 11537 mRNA_3169 0.88 +1.1
1,419 - 11537 mRNA_3169 0.89 -0.1
1,423 - 11537 mRNA_3169 0.90 -0.0
1,429 - -0.8
1,453 + -0.7
1,459 + -0.0
1,459 + -0.1
1,460 - -0.9
1,461 + +0.1
1,462 + -0.2
1,467 + +0.2
1,470 - +1.1
1,474 - -0.1
1,485 + -0.4
1,520 + +0.7
1,523 + +0.2
1,531 - +0.5
1,537 + +0.3
1,541 + +1.1
1,562 + -0.3
1,567 + -0.3
1,572 + -1.0
1,582 - -0.8
1,584 - +0.5
1,589 + +1.1
1,596 - -0.1
1,601 - -0.2
1,602 + -1.3
1,605 + +0.4
1,609 + -0.4
1,616 + -0.1
1,636 + +0.1
1,654 + -1.2
1,656 - -0.3
1,666 + +1.3
1,675 - +1.2
1,682 - -1.2
1,697 - -0.1
1,709 + -0.0
1,709 - -0.8
1,711 + -0.4
1,718 - -2.6
1,719 + +0.2
1,722 - +1.4
1,723 + -0.0
1,725 - -0.3
1,725 - +0.2
1,727 + -1.1
1,730 + +2.0
1,731 + -0.3
1,732 + -0.3
1,732 + +0.7
1,734 + +1.8
1,734 + +0.3
1,734 + +0.8
1,739 - +0.2
1,740 + -1.3
1,744 - -0.2
1,747 + -0.1
1,749 + -0.2
1,759 + -0.8
1,759 + +0.8
1,759 + +0.0
1,761 + -1.5
1,763 + -0.3
1,765 + +0.2
1,767 + -1.0
1,769 + +0.2
1,772 + +0.3
1,772 + -0.7
1,774 + -1.0
1,774 + -1.7
1,775 + -1.3
1,776 - -0.3
1,776 + +1.9
1,777 + -0.3
1,778 + -0.0
1,778 - -0.2
1,781 - -0.5
1,783 - -0.4
1,783 - +0.2
1,783 - +1.6
1,783 - +0.8
1,784 + -2.2
1,789 + -2.1
1,789 - -0.3
1,791 + -0.5
1,792 + +0.2
1,793 + -1.5
1,795 + -0.8
1,796 + -0.4
1,796 - +0.4
1,798 + -0.9
1,800 + -0.2
1,801 + +0.5
1,805 + -0.4
1,805 + -0.6
1,807 + +0.3
1,813 - +0.2
1,814 + -0.1
1,814 + +1.4
1,818 - -0.3
1,851 - +0.2
1,874 + +1.7
1,881 - +0.8
1,885 - -0.2
1,891 - +0.4
1,896 - -0.0
1,912 + +0.5
1,912 + -0.1
1,914 - +0.2
1,916 - +0.1
1,917 - -1.1
1,919 + +0.0
1,922 - -0.2
1,923 - +0.4
1,934 - +1.7
1,935 + -0.1
1,938 - -0.2
1,938 - -0.1
1,940 - -0.9
1,941 + +0.5
1,941 + -0.2
1,942 + +0.1
1,943 - -0.6
1,944 + -0.4
1,944 - -1.7
1,945 - +1.2
1,945 + -0.1
1,946 - +0.2
1,947 + -0.1
1,960 - +0.1
1,968 + +0.1
1,980 + +1.4
2,015 + +1.4
2,067 - -2.2
2,081 - -0.9
2,091 + +1.7
2,220 + +0.2
2,229 - -0.2
2,235 - +0.4
2,237 - -0.4
2,242 + -0.2
2,242 - -0.3
2,245 - +0.6
2,248 - -1.4
2,251 + +0.1
2,254 - -0.5
2,261 + -0.4
2,262 - +1.2
2,266 + -0.3
2,268 + +1.3
2,400 + 11538 mRNA_3170 0.21 +0.3
2,401 - 11538 mRNA_3170 0.21 +1.3
2,404 + 11538 mRNA_3170 0.22 +0.6
2,414 + 11538 mRNA_3170 0.23 -0.3
2,420 - 11538 mRNA_3170 0.23 -1.0
2,439 + 11538 mRNA_3170 0.25 -0.5
2,446 + 11538 mRNA_3170 0.26 -1.5
2,470 - 11538 mRNA_3170 0.28 +1.6
2,516 - 11538 mRNA_3170 0.32 -0.2

Or see this region's nucleotide sequence