Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3302

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3302: 11670 - K07232 chaC cation transport protein ChaC, at 343,221 to 344,290 11670

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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342,231 + +0.4
342,232 + +0.9
342,268 + +0.1
342,271 + +0.2
342,291 - +0.0
342,310 + -0.0
342,310 + -0.2
342,312 + +2.1
342,328 + -1.2
342,336 - -0.0
342,340 - -0.2
342,384 + +0.7
342,414 + -0.5
342,421 - +0.2
342,423 - +0.5
342,440 - +0.0
342,446 - -0.9
342,463 - +0.5
342,563 + +1.3
342,588 - -0.0
342,704 - -1.2
342,713 + -0.2
342,768 + -0.9
343,017 + +0.9
343,606 - 11670 mRNA_3302 0.36 +0.2
343,633 - 11670 mRNA_3302 0.39 +0.7
344,499 + -0.4

Or see this region's nucleotide sequence