Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3350

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11717 and 11718 are separated by 520 nucleotides11718 and 11719 are separated by 674 nucleotides mRNA_3349: 11717 - K13179 DDX18, HAS1 ATP-dependent RNA helicase DDX18/HAS1, at 450,209 to 452,145 11717 mRNA_3350: 11718 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 452,666 to 460,645 11718 mRNA_3351: 11719 - K12196 VPS4 vacuolar protein-sorting-associated protein 4, at 461,320 to 463,748 11719

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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452,563 + -0.3
452,577 + -0.1
452,610 + +0.7
452,651 + -0.1
452,716 + -0.2
452,719 + -0.2
452,727 + +0.7
452,868 + -0.0
452,949 + -0.1
454,325 - 11718 mRNA_3350 0.21 +0.8
454,444 + 11718 mRNA_3350 0.22 -0.9
454,576 + 11718 mRNA_3350 0.24 +0.2
454,593 - 11718 mRNA_3350 0.24 -0.9
454,719 - 11718 mRNA_3350 0.26 -2.3
454,840 + 11718 mRNA_3350 0.27 +1.8
454,879 - 11718 mRNA_3350 0.28 +0.2
454,966 + 11718 mRNA_3350 0.29 +0.2
454,966 + 11718 mRNA_3350 0.29 -0.0
455,037 - 11718 mRNA_3350 0.30 +0.8
455,089 + 11718 mRNA_3350 0.30 -0.5
455,126 - 11718 mRNA_3350 0.31 -2.0
455,208 - 11718 mRNA_3350 0.32 -1.4
455,243 - 11718 mRNA_3350 0.32 +1.2
455,254 - 11718 mRNA_3350 0.32 +0.4
455,517 + 11718 mRNA_3350 0.36 +0.2
455,520 - 11718 mRNA_3350 0.36 +1.1
455,562 - 11718 mRNA_3350 0.36 -1.3
455,700 - 11718 mRNA_3350 0.38 -0.1
455,723 - 11718 mRNA_3350 0.38 -1.4
455,839 + 11718 mRNA_3350 0.40 -0.5
455,873 + 11718 mRNA_3350 0.40 +0.8
455,895 + 11718 mRNA_3350 0.40 -1.2
455,946 + 11718 mRNA_3350 0.41 +1.5
455,963 - 11718 mRNA_3350 0.41 -0.9
456,176 - 11718 mRNA_3350 0.44 -0.4
456,284 - 11718 mRNA_3350 0.45 -0.9
456,360 - 11718 mRNA_3350 0.46 -0.4
456,678 + 11718 mRNA_3350 0.50 +0.5
456,721 - 11718 mRNA_3350 0.51 -0.7
456,729 + 11718 mRNA_3350 0.51 -0.0
456,788 - 11718 mRNA_3350 0.52 -0.5
457,068 - 11718 mRNA_3350 0.55 +0.1
457,322 - 11718 mRNA_3350 0.58 +0.8
457,488 + 11718 mRNA_3350 0.60 -0.4
457,558 + 11718 mRNA_3350 0.61 +0.1
457,564 + 11718 mRNA_3350 0.61 -0.2
457,780 - 11718 mRNA_3350 0.64 -0.4
458,241 - 11718 mRNA_3350 0.70 +0.1
458,295 + 11718 mRNA_3350 0.71 +0.1
458,650 + 11718 mRNA_3350 0.75 -1.1
459,031 - 11718 mRNA_3350 0.80 -0.3
459,093 + 11718 mRNA_3350 0.81 -0.4
459,213 - 11718 mRNA_3350 0.82 +0.5
459,226 - 11718 mRNA_3350 0.82 +0.6
459,242 - 11718 mRNA_3350 0.82 -0.3
459,479 - 11718 mRNA_3350 0.85 -0.6
459,506 + 11718 mRNA_3350 0.86 +0.2
459,612 + 11718 mRNA_3350 0.87 +0.3
459,643 - 11718 mRNA_3350 0.87 -0.5
459,764 - 11718 mRNA_3350 0.89 -0.2
459,772 + 11718 mRNA_3350 0.89 -1.2
459,804 + 11718 mRNA_3350 0.89 -0.9
459,833 + 11718 mRNA_3350 0.90 +0.2
459,965 + +0.5
460,082 - -0.3
460,099 + -0.1
460,100 - -0.7
460,103 - -0.8
460,107 + +0.2
460,107 + +0.0
460,394 + +0.4
460,404 - +0.9
460,630 + +0.4
460,638 + +1.2
460,673 + -0.1
460,826 + +1.7
460,826 + -0.1
460,959 - -1.0
460,962 + -0.9
460,962 + -0.7
460,986 - +0.2
460,987 + +0.2
460,990 - -0.4
461,024 + -0.4
461,245 - +1.1
461,268 - -1.0
461,272 + +0.2
461,275 - -0.1
461,283 - -0.4
461,294 - +0.2

Or see this region's nucleotide sequence