Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3356

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11723 and 11724 are separated by 448 nucleotides11724 and 11725 are separated by 182 nucleotides mRNA_3355: 11723 - K01126 E3.1.4.46, glpQ, ugpQ glycerophosphoryl diester phosphodiesterase, at 482,754 to 484,525 11723 mRNA_3356: 11724 - K19306 BUD23 18S rRNA (guanine1575-N7)-methyltransferase, at 484,974 to 486,354 11724 mRNA_3357: 11725 - BLAST dna-directed rna polymerase i subunit rpa43 [Rhod..., at 486,537 to 488,799 11725

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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484,056 - 11723 mRNA_3355 0.73 -0.1
484,207 + 11723 mRNA_3355 0.82 -0.1
484,240 + 11723 mRNA_3355 0.84 -1.1
484,513 + +0.1
484,646 - -0.1
484,780 + +0.0
484,808 + +0.9
485,092 - -0.2
486,452 - -0.3

Or see this region's nucleotide sequence