Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3361

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11728 and 11729 are separated by 420 nucleotides11729 and 11730 are separated by 389 nucleotides mRNA_3360: 11728 - KOG4836 Uncharacterized conserved protein, at 493,196 to 494,520 11728 mRNA_3361: 11729 - K11247 SH3GL endophilin-A, at 494,941 to 495,602 11729 mRNA_3362: 11730 - BLAST vacuolar assembly/sorting protein DID2 [Moesziomyces ..., at 495,992 to 499,759 11730

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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494,204 - 11728 mRNA_3360 0.76 -1.0
494,214 - 11728 mRNA_3360 0.77 -0.4
494,245 - 11728 mRNA_3360 0.79 +0.5
494,269 - 11728 mRNA_3360 0.81 -0.6
494,398 - -0.1
494,407 - -1.1
494,414 - -0.3
494,534 + +0.6
494,547 - -0.7
494,572 + -1.2
494,846 + +0.8
495,112 - 11729 mRNA_3361 0.26 +0.5
495,158 + 11729 mRNA_3361 0.33 -0.3
495,239 - 11729 mRNA_3361 0.45 -0.5
495,284 + 11729 mRNA_3361 0.52 -0.9
495,868 - +0.0
495,894 - +1.3
495,999 + -0.2
496,002 - -1.2
496,156 + +0.3
496,156 - -0.5
496,185 - +0.1
496,295 - -1.6
496,487 - 11730 mRNA_3362 0.13 -0.6
496,487 - 11730 mRNA_3362 0.13 -0.7

Or see this region's nucleotide sequence