Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3382

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11749 and 11750 are separated by 267 nucleotides11750 and 11751 are separated by 264 nucleotides mRNA_3381: 11749 - K06027 NSF vesicle-fusing ATPase, at 542,498 to 545,831 11749 mRNA_3382: 11750 - HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217, at 546,099 to 548,480 11750 mRNA_3383: 11751 - HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383, at 548,745 to 549,848 11751

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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546,013 - -0.7
546,037 + -0.4
546,042 + -0.6
546,138 + +1.7
546,168 - +0.2
546,171 + -0.9
546,200 - +0.8
546,305 + +0.1
546,316 - -0.0
546,431 - 11750 mRNA_3382 0.14 -0.1
546,437 + 11750 mRNA_3382 0.14 +0.2
546,459 - 11750 mRNA_3382 0.15 +0.7
546,464 - 11750 mRNA_3382 0.15 +0.0
546,601 + 11750 mRNA_3382 0.21 -0.3
546,603 - 11750 mRNA_3382 0.21 -0.6
546,728 + 11750 mRNA_3382 0.26 -0.8
546,754 + 11750 mRNA_3382 0.27 -1.0
546,778 + 11750 mRNA_3382 0.29 -0.1
546,958 + 11750 mRNA_3382 0.36 +0.8
547,645 - 11750 mRNA_3382 0.65 +0.4
547,759 - 11750 mRNA_3382 0.70 +0.5
548,294 - +1.1
548,607 - +0.1
548,632 - -0.1
548,761 + -0.3
548,773 + -1.8
549,240 + 11751 mRNA_3383 0.45 -1.7

Or see this region's nucleotide sequence