Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3406

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11773 and 11774 are separated by 632 nucleotides11774 and 11775 are separated by 224 nucleotides mRNA_3405: 11773 - K17922 SNX8, MVP1 sorting nexin-8, at 10,068 to 11,831 11773 mRNA_3406: 11774 - Hypothetical Protein, at 12,464 to 13,384 11774 mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13,609 to 17,494 11775

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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11,866 + -0.2
12,019 - +0.2
12,034 - -1.9
12,065 - +1.0
12,274 - +0.2
12,305 + -0.5
12,316 - -0.5
12,334 - +0.2
12,341 - +0.2
12,391 + +0.3
12,447 - +0.4
12,453 - +0.1
12,469 - -0.5
12,471 - +0.2
12,473 - -0.3
12,484 - -0.2
12,488 + -0.2
12,503 + +0.2
12,508 + +0.1
12,517 + -0.3
12,519 + +0.0
12,648 + 11774 mRNA_3406 0.20 -0.6
12,661 + 11774 mRNA_3406 0.21 -1.6
12,772 - 11774 mRNA_3406 0.33 +0.1
12,778 + 11774 mRNA_3406 0.34 +0.6
12,779 - 11774 mRNA_3406 0.34 +0.2
12,799 + 11774 mRNA_3406 0.36 -0.6
12,803 - 11774 mRNA_3406 0.37 +0.6
12,805 - 11774 mRNA_3406 0.37 -1.3
12,817 - 11774 mRNA_3406 0.38 +0.4
12,821 + 11774 mRNA_3406 0.39 +0.2
12,821 - 11774 mRNA_3406 0.39 -0.9
12,827 + 11774 mRNA_3406 0.39 -2.0
12,936 - 11774 mRNA_3406 0.51 -0.3
12,936 - 11774 mRNA_3406 0.51 +0.3
12,949 + 11774 mRNA_3406 0.53 -0.2
12,957 + 11774 mRNA_3406 0.54 +1.1
12,964 - 11774 mRNA_3406 0.54 -1.0
12,964 + 11774 mRNA_3406 0.54 -1.3
12,971 - 11774 mRNA_3406 0.55 +0.6
12,973 - 11774 mRNA_3406 0.55 -0.8
12,976 - 11774 mRNA_3406 0.56 -0.0
13,100 - 11774 mRNA_3406 0.69 +1.3
13,114 - 11774 mRNA_3406 0.71 -0.5
13,119 - 11774 mRNA_3406 0.71 +0.7
13,122 - 11774 mRNA_3406 0.71 +0.3
13,130 + 11774 mRNA_3406 0.72 -0.3
13,136 - 11774 mRNA_3406 0.73 +1.1
13,225 - 11774 mRNA_3406 0.83 +0.7
13,242 - 11774 mRNA_3406 0.84 +0.7
13,273 + 11774 mRNA_3406 0.88 +0.4
13,286 - 11774 mRNA_3406 0.89 -0.6
13,300 + +0.4
13,318 - -0.8
13,343 + +0.6
13,348 - -0.2
13,348 - +0.3
13,381 - -0.3
13,386 + -0.5
13,389 - -0.9
13,399 - +1.0
13,401 - +0.0
13,415 - +1.0
13,415 + -0.2
13,418 + +0.3
13,427 + +0.1
13,445 - +1.2
13,455 - -0.1
13,466 - +0.0
13,536 - -0.8
13,583 - -0.3
13,750 + +1.7
14,003 - 11775 mRNA_3407 0.10 +0.0
14,040 - 11775 mRNA_3407 0.11 -0.4

Or see this region's nucleotide sequence