Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3489

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11857 and 11858 are separated by 208 nucleotides mRNA_3489: 11857 - BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [..., at 226,345 to 227,373 11857 mRNA_3490: 11858 - K05236 COPA, RET1 coatomer subunit alpha, at 227,582 to 231,954 11858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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225,354 + +0.3
225,572 - +0.2
225,757 + +1.1
225,774 + -1.8
225,876 + +0.5
226,021 + -1.2
226,035 - -0.5
226,038 - -0.3
226,041 + -1.4
226,150 - +0.1
226,155 - -0.1
226,186 + +1.1
226,283 + +1.5
226,289 - +1.1
226,311 - -0.8
226,316 + -0.8
226,321 + +1.4
226,349 + +1.2
226,368 - -0.2
226,460 + 11857 mRNA_3489 0.11 +0.4
227,337 - -0.4
227,355 + -1.1
227,371 + -0.0
227,558 + -0.5

Or see this region's nucleotide sequence