Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3511

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11879 and 11880 are separated by 43 nucleotides mRNA_3511: 11879 - K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein, at 270,571 to 274,030 11879 mRNA_3512: 11880 - K10873 RAD52 DNA repair and recombination protein RAD52, at 274,074 to 276,108 11880

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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269,714 + +1.2
269,996 - -0.2
270,157 + +0.0
270,157 - +0.4
270,281 - +0.6
270,287 + +0.9
270,296 - +1.4
270,296 + -0.0
270,436 - +0.8
270,460 + -1.3
270,786 + +0.6
271,162 - 11879 mRNA_3511 0.17 -0.7
271,351 - 11879 mRNA_3511 0.23 -2.4
273,945 + +0.5
274,402 + 11880 mRNA_3512 0.16 -1.0
274,438 + 11880 mRNA_3512 0.18 -0.6
274,546 - 11880 mRNA_3512 0.23 -1.0
274,660 + 11880 mRNA_3512 0.29 +0.3
274,660 - 11880 mRNA_3512 0.29 +0.5
274,697 + 11880 mRNA_3512 0.31 +0.4
274,699 - 11880 mRNA_3512 0.31 +0.7
274,706 - 11880 mRNA_3512 0.31 +0.3
274,827 - 11880 mRNA_3512 0.37 +1.5
274,827 - 11880 mRNA_3512 0.37 +1.2
274,854 + 11880 mRNA_3512 0.38 -0.5

Or see this region's nucleotide sequence