Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3524

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11891 and 11892 are separated by 432 nucleotides11892 and 11893 are separated by 294 nucleotides mRNA_3523: 11891 - K08064 NFYA nuclear transcription factor Y, alpha, at 304,900 to 306,087 11891 mRNA_3524: 11892 - Hypothetical Protein, at 306,520 to 307,367 11892 mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307,662 to 311,002 11893

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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305,701 - 11891 mRNA_3523 0.67 -0.3
305,831 - 11891 mRNA_3523 0.78 +0.5
305,995 - -0.0
306,002 + +0.7
306,456 + -0.4
306,584 + -1.0
306,829 + 11892 mRNA_3524 0.36 +0.0
306,840 + 11892 mRNA_3524 0.38 -0.6
306,998 - 11892 mRNA_3524 0.56 +0.8
307,043 + 11892 mRNA_3524 0.62 -0.2
307,053 + 11892 mRNA_3524 0.63 +0.2
307,084 + 11892 mRNA_3524 0.67 +0.2
307,125 - 11892 mRNA_3524 0.71 -1.4
307,152 + 11892 mRNA_3524 0.75 -0.5
307,164 - 11892 mRNA_3524 0.76 +0.2
307,226 + 11892 mRNA_3524 0.83 +0.5
307,233 - 11892 mRNA_3524 0.84 -0.1
307,233 - 11892 mRNA_3524 0.84 -0.5
307,243 + 11892 mRNA_3524 0.85 -0.1
307,248 + 11892 mRNA_3524 0.86 -1.3
307,257 - 11892 mRNA_3524 0.87 +0.2
307,289 + +0.9
307,351 - -1.5
307,356 + -0.8
307,367 + +0.2
307,405 + -0.4
307,407 - -1.2
307,416 - -0.8
307,456 + -0.6
307,515 - -1.4
307,769 - +0.6
307,816 - -1.5
307,904 - -0.2
307,904 - -2.3
307,905 - +0.5
307,907 - -0.4
307,908 + -0.1
307,910 + -0.3
307,919 - -0.4
307,919 - +0.3
307,937 + +1.0
308,331 - 11893 mRNA_3525 0.20 -1.2

Or see this region's nucleotide sequence