Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3582

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11949 and 11950 are separated by 293 nucleotides11950 and 11951 are separated by 788 nucleotides mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97,924 to 100,153 11949 mRNA_3582: 11950 - HMMPfam-Polycystin cation channel-PF08016, at 100,447 to 103,297 11950 mRNA_3583: 11951 - Hypothetical Protein, at 104,086 to 104,307 11951

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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99,518 - 11949 mRNA_3581 0.71 -0.9
99,528 - 11949 mRNA_3581 0.72 +0.4
99,557 - 11949 mRNA_3581 0.73 +1.8
99,652 + 11949 mRNA_3581 0.77 -0.7
99,703 - 11949 mRNA_3581 0.80 -0.4
99,858 - 11949 mRNA_3581 0.87 -0.1
100,348 - +0.8
100,648 - -0.1
101,094 - 11950 mRNA_3582 0.23 -2.3
101,166 - 11950 mRNA_3582 0.25 +0.8
101,683 + 11950 mRNA_3582 0.43 -0.3
101,817 - 11950 mRNA_3582 0.48 -0.7
101,954 + 11950 mRNA_3582 0.53 -1.1
102,239 + 11950 mRNA_3582 0.63 -0.1
102,408 - 11950 mRNA_3582 0.69 +1.5
102,529 - 11950 mRNA_3582 0.73 -1.0
102,692 + 11950 mRNA_3582 0.79 -1.6
102,844 + 11950 mRNA_3582 0.84 +0.0
102,928 - 11950 mRNA_3582 0.87 -0.3
102,980 - 11950 mRNA_3582 0.89 +0.1
103,300 + +1.7
103,356 + -2.1
103,374 - -0.4
103,394 - +0.5
103,395 + +0.5
103,399 - -0.6
103,406 + -1.7
103,407 + +0.6
103,414 - -0.9
103,415 + -0.2
103,422 + -0.3
103,436 - +0.4
103,438 - -1.1
103,440 - -1.4
103,486 - -0.8
103,489 + -0.1
103,709 + -0.1
103,715 - +1.5
103,715 - +0.1
103,717 - -0.9
103,734 + +1.3
103,876 - -0.6
104,015 + -0.1
104,134 - 11951 mRNA_3583 0.22 +0.2
104,146 + 11951 mRNA_3583 0.27 -0.5
104,147 - 11951 mRNA_3583 0.27 -0.7

Or see this region's nucleotide sequence