Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3626

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11993 and 11994 are separated by 391 nucleotides11994 and 11995 are separated by 895 nucleotides mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624 11993 mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198,016 to 198,652 11994 mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199,548 to 202,220 11995

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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197,225 - 11993 mRNA_3625 0.86 -0.0
197,364 - +0.0
197,393 - -1.5
197,498 - -0.8
197,522 - +0.1
197,536 + -0.9
197,542 + -0.3
197,545 - +3.3
197,633 + +0.7
197,644 - +0.5
197,681 - +0.4
197,686 + +1.6
197,688 - +0.2
197,696 - -0.4
197,696 - -1.0
197,706 + -0.6
197,713 - -1.1
197,713 - +1.2
197,750 - -0.2
197,755 - -1.0
197,878 - -0.1
197,882 + -0.2
197,885 + -0.3
197,888 + -0.2
197,889 + +0.9
197,891 + -1.6
197,898 - -1.1
197,898 - -0.6
198,011 - -0.7
198,019 - -0.7
198,033 - +0.9
198,196 - 11994 mRNA_3626 0.28 +0.8
198,489 - 11994 mRNA_3626 0.74 +0.2
199,044 + -0.3
199,200 - +0.2
199,204 + +0.2
199,342 + -0.4
199,511 + +1.5
199,512 + +0.5

Or see this region's nucleotide sequence