Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3633

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12001 and 12002 are separated by 409 nucleotides mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295 12001 mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567 12002

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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210,092 - -0.1
210,261 + +0.9
210,951 - +0.1
211,119 - -0.4
211,809 - 12001 mRNA_3633 0.34 -0.0
211,831 + 12001 mRNA_3633 0.35 -2.9
212,475 + 12001 mRNA_3633 0.63 -0.3
212,502 + 12001 mRNA_3633 0.65 +0.3
212,740 + 12001 mRNA_3633 0.75 -1.5
212,828 + 12001 mRNA_3633 0.79 -0.7
213,027 - 12001 mRNA_3633 0.88 +0.1
213,304 - -1.0
213,430 - -0.6
213,771 + -0.6
214,018 - 12002 mRNA_3634 0.17 +0.3
214,027 + 12002 mRNA_3634 0.17 -1.2
214,047 + 12002 mRNA_3634 0.18 -1.2
214,070 + 12002 mRNA_3634 0.20 +0.1
214,266 + 12002 mRNA_3634 0.30 +1.2

Or see this region's nucleotide sequence