Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3644

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12012 and 12013 are separated by 990 nucleotides mRNA_3644: 12012 - Hypothetical Protein, at 242,655 to 243,950 12012 mRNA_3645: 12013 - K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, at 244,941 to 247,626 12013

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
241,820 - +1.0
241,822 + -0.2
241,836 + -1.5
241,965 + -0.1
241,967 + +0.2
241,991 + -0.1
241,995 + -0.1
242,098 - -1.1
242,115 - +0.2
242,122 + +0.1
242,123 - +1.1
242,132 - +1.4
242,143 + +1.2
242,144 + -1.2
242,146 - +1.0
242,259 + +0.9
242,302 + -0.3
242,306 + +0.0
242,409 + +0.7
242,524 - +0.1
242,669 - -0.1
242,725 - -0.3
242,726 + +0.9
242,911 + 12012 mRNA_3644 0.20 +1.0
243,065 - 12012 mRNA_3644 0.32 -0.6
243,127 - 12012 mRNA_3644 0.36 -1.7
243,160 - 12012 mRNA_3644 0.39 -0.5
243,462 + 12012 mRNA_3644 0.62 -0.7
243,573 + 12012 mRNA_3644 0.71 -0.7
244,103 + -0.1
244,141 - +0.2
244,152 + +0.3
244,171 - +0.2
244,285 + -1.6
244,311 + -0.6
244,327 + +0.8
244,411 + -0.9
244,423 + -1.6
244,435 - -0.5
244,443 + +0.0
244,451 + +0.8
244,576 - -0.9
244,580 + +0.3
244,587 + +0.4
244,591 - +0.3
244,593 - -0.2
244,697 - +0.6
244,722 + +0.8
244,731 + +0.7
244,734 - -0.4
244,742 + +0.1
244,753 + -1.0
244,759 + -0.2
244,763 - +0.5
244,780 + -0.8
244,784 - -0.6
244,785 + +0.9
244,886 + -0.5
244,898 - -0.9
244,949 + +0.0

Or see this region's nucleotide sequence