Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3653

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12020 and 12021 are separated by 125 nucleotides mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259,462 to 260,271 12020 mRNA_3653: 12021 - KOG2437 Muskelin, at 260,397 to 263,923 12021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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259,431 - +0.5
259,459 + +0.6
259,576 - 12020 mRNA_3652 0.14 +0.0
259,600 + 12020 mRNA_3652 0.17 -0.1
259,727 + 12020 mRNA_3652 0.33 +0.7
259,736 - 12020 mRNA_3652 0.34 +1.7
259,766 + 12020 mRNA_3652 0.38 +0.7
259,915 + 12020 mRNA_3652 0.56 +0.1
260,019 + 12020 mRNA_3652 0.69 -0.0
260,029 + 12020 mRNA_3652 0.70 -1.0
260,045 + 12020 mRNA_3652 0.72 +1.1
260,322 - +0.5
260,324 + -0.4
260,329 - -0.8
260,330 + +1.9
260,335 + +2.1
260,336 + -0.6
260,340 + +1.5
260,458 - -0.5
260,490 + +0.0
260,498 + +0.7
260,517 + -1.0
260,620 - +0.2
260,620 - -0.2
260,659 + +1.2
260,772 + 12021 mRNA_3653 0.11 -0.3
260,779 + 12021 mRNA_3653 0.11 -1.7
260,781 + 12021 mRNA_3653 0.11 +0.1
260,787 + 12021 mRNA_3653 0.11 +0.0
260,792 + 12021 mRNA_3653 0.11 +0.6
260,816 + 12021 mRNA_3653 0.12 -0.5
260,928 - 12021 mRNA_3653 0.15 -2.7
260,947 + 12021 mRNA_3653 0.16 -0.7
261,105 + 12021 mRNA_3653 0.20 +0.1
261,479 + 12021 mRNA_3653 0.31 -0.2
261,643 + 12021 mRNA_3653 0.35 +0.1
261,662 - 12021 mRNA_3653 0.36 -0.6
262,047 - 12021 mRNA_3653 0.47 +0.2
262,056 - 12021 mRNA_3653 0.47 -0.5
262,325 + 12021 mRNA_3653 0.55 -0.2
262,481 - 12021 mRNA_3653 0.59 -0.7
262,768 + 12021 mRNA_3653 0.67 -0.0
263,042 - 12021 mRNA_3653 0.75 -0.3
263,222 + 12021 mRNA_3653 0.80 +1.4
263,645 - +0.2
263,805 + -0.6
263,816 + -0.6
263,914 + -1.2
263,930 + +1.0
263,944 - +0.2
264,093 + +1.7
264,098 + +1.0
264,106 + -0.1
264,108 + -0.8
264,110 + +0.6
264,117 + +0.1
264,122 + +0.5
264,169 - +0.8
264,308 - +0.6
264,312 - -0.0
264,325 - -0.0
264,332 + +0.0
264,332 - +0.6
264,334 + -0.2
264,399 - +1.6
264,459 + -0.7
264,462 + -0.4
264,466 - -0.1
264,466 - -1.2
264,467 + +0.3
264,479 - -1.5
264,575 - -1.0
264,585 - -0.8
264,599 + +0.9
264,599 - +0.2
264,601 + +0.6
264,603 + +0.1
264,619 - -1.2
264,633 - -0.5
264,656 + -0.5
264,668 - +0.7
264,744 - -0.9
264,829 - -0.0
264,891 + -1.6
264,897 - -0.5

Or see this region's nucleotide sequence