Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3659

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12026 and 12027 are separated by 379 nucleotides12027 and 12028 are separated by 757 nucleotides mRNA_3658: 12026 - Hypothetical Protein, at 282,241 to 283,121 12026 mRNA_3659: 12027 - Hypothetical Protein, at 283,501 to 284,501 12027 mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285,259 to 286,189 12028

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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282,535 - 12026 mRNA_3658 0.33 +0.3
282,550 + 12026 mRNA_3658 0.35 -0.3
282,562 - 12026 mRNA_3658 0.36 -1.0
282,571 - 12026 mRNA_3658 0.37 -0.1
282,572 + 12026 mRNA_3658 0.38 -0.2
282,581 - 12026 mRNA_3658 0.39 -0.1
282,582 - 12026 mRNA_3658 0.39 -1.0
282,587 - 12026 mRNA_3658 0.39 +0.3
282,590 - 12026 mRNA_3658 0.40 -0.4
282,593 - 12026 mRNA_3658 0.40 +0.5
282,593 + 12026 mRNA_3658 0.40 -0.6
282,594 - 12026 mRNA_3658 0.40 -1.3
282,596 + 12026 mRNA_3658 0.40 +0.3
282,601 - 12026 mRNA_3658 0.41 +0.0
282,612 + 12026 mRNA_3658 0.42 -0.6
282,640 + 12026 mRNA_3658 0.45 +1.4
282,647 - 12026 mRNA_3658 0.46 -0.4
282,690 - 12026 mRNA_3658 0.51 -1.1
282,746 - 12026 mRNA_3658 0.57 -0.1
282,760 - 12026 mRNA_3658 0.59 +0.1
282,766 - 12026 mRNA_3658 0.60 -1.0
282,770 + 12026 mRNA_3658 0.60 -2.4
282,806 + 12026 mRNA_3658 0.64 -0.9
282,812 + 12026 mRNA_3658 0.65 +0.7
282,873 - 12026 mRNA_3658 0.72 -0.1
282,900 + 12026 mRNA_3658 0.75 +0.2
282,928 - 12026 mRNA_3658 0.78 -0.0
282,930 + 12026 mRNA_3658 0.78 +0.8
283,073 - -1.3
283,075 + -0.6
283,163 - +0.6
283,199 - -1.1
283,237 - -0.3
283,239 - -0.7
283,790 + 12027 mRNA_3659 0.29 +0.4
284,244 - 12027 mRNA_3659 0.74 -0.1
284,481 - -0.5
284,664 + -1.0
285,222 - -0.3
285,346 - +0.2
285,366 + 12028 mRNA_3660 0.11 +1.2

Or see this region's nucleotide sequence