Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3673

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12041 and 12042 are separated by 535 nucleotides mRNA_3673: 12041 - K11251 H2A histone H2A, at 313,222 to 314,004 12041 mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314,540 to 316,836 12042

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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312,623 + -0.8
313,036 + -0.1
313,192 + -1.9
313,638 + 12041 mRNA_3673 0.53 +0.3
313,642 - 12041 mRNA_3673 0.54 -2.5
313,906 - 12041 mRNA_3673 0.87 -0.1
313,919 + 12041 mRNA_3673 0.89 -0.5
314,075 + -0.1
314,202 - -0.0
314,206 + -0.0
314,210 + +1.2
314,228 - -0.2
314,229 + +1.6
314,234 + -0.9
314,235 - -0.3
314,271 - +0.9
314,272 + -0.3
314,278 + -0.8
314,278 + -0.3
314,278 - -0.1
314,279 + +0.1
314,282 - -1.2
314,283 + -1.8
314,285 + +0.8
314,288 - -0.5
314,289 + -0.2
314,297 - -0.4
314,311 - -0.6
314,311 - +0.0
314,312 + -0.7
314,344 + +0.5
314,345 + -0.6
314,351 - +0.2
314,351 - +0.6
314,359 + +0.9
314,376 + -0.4
314,377 + +0.2
314,400 + +0.0
314,465 + -0.8
314,515 + -0.5
314,518 + +0.3
314,522 + +0.1
314,533 - +0.9
314,546 + +1.0
314,675 - -0.7
314,676 + -0.4
314,825 + 12042 mRNA_3674 0.12 -0.5
314,925 + 12042 mRNA_3674 0.17 -0.5
314,966 + 12042 mRNA_3674 0.19 -0.2

Or see this region's nucleotide sequence