Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3723

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12090 and 12091 are separated by 319 nucleotides mRNA_3722: 12090 - K11251 H2A histone H2A, at 433,464 to 434,074 12090 mRNA_3723: 12091 - K11252 H2B histone H2B, at 434,394 to 435,035 12091

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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433,551 + 12090 mRNA_3722 0.14 -0.4
433,741 + 12090 mRNA_3722 0.45 -1.5
433,869 + 12090 mRNA_3722 0.66 -0.0
433,880 - 12090 mRNA_3722 0.68 -0.7
434,155 - -1.8
434,169 - +0.2
434,173 + -0.8
434,178 + +0.4
434,180 + +0.1
434,182 - -1.6
434,183 + -1.5
434,239 - +0.5
434,244 + +0.7
434,289 + +0.3
434,297 + +0.3
434,303 - +0.0
434,316 + -1.3
434,321 - +0.8
434,322 - -0.4
434,336 - -0.6
434,438 - -0.9
434,444 - -0.1
434,452 + +0.3
435,192 - +0.9
435,281 - -0.7
435,333 - +0.2
435,349 + -0.3
435,694 + -0.3
435,813 + +0.2
435,936 - +0.1

Or see this region's nucleotide sequence