Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3743

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12110 and 12111 are separated by 310 nucleotides mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476,780 to 478,513 12111

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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475,797 - 12110 mRNA_3742 0.66 -0.3
476,274 + -1.2
476,501 - -0.8
476,545 + +2.2
476,550 + -1.1
476,724 - +0.5
477,006 + 12111 mRNA_3743 0.13 -0.1
477,010 + 12111 mRNA_3743 0.13 -0.2
477,031 + 12111 mRNA_3743 0.14 +0.5
477,693 + 12111 mRNA_3743 0.53 +0.3
477,860 - 12111 mRNA_3743 0.62 -0.5
477,875 - 12111 mRNA_3743 0.63 +0.5
477,889 + 12111 mRNA_3743 0.64 +0.6
478,181 - 12111 mRNA_3743 0.81 -0.3
478,309 - 12111 mRNA_3743 0.88 -0.9
478,312 + 12111 mRNA_3743 0.88 +0.3
478,324 + 12111 mRNA_3743 0.89 -0.0
478,589 + +0.4
478,592 + +0.6
478,594 - -2.2
478,603 + -0.9
478,606 - +0.0
478,645 - -1.5
478,764 - -1.0
478,764 + +0.1
478,772 + +0.1
478,772 + -0.8
478,785 - +0.6
478,882 - -0.0
478,899 - +1.7
478,899 - +0.3
478,899 - -0.6
478,899 - -1.5
478,904 + +0.3
478,908 + -0.9
478,908 + +1.3
478,935 + +0.4
478,943 + -0.7
479,380 + +0.3
479,504 + -0.4
479,511 + -0.4

Or see this region's nucleotide sequence