Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3745

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12112 and 12113 are separated by 241 nucleotides12113 and 12114 are separated by 246 nucleotides mRNA_3744: 12112 - KOG0955 PHD finger protein BR140/LIN-49, at 479,560 to 485,967 12112 mRNA_3745: 12113 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 486,209 to 486,880 12113 mRNA_3746: 12114 - Hypothetical Protein, at 487,127 to 488,004 12114

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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485,451 + -0.5
485,460 + +0.6
485,872 - -0.5
485,895 + -0.0
485,901 + +0.6
486,072 - +0.8
486,346 - 12113 mRNA_3745 0.20 +0.6
486,937 - +0.0
486,965 + +0.1
487,072 - -1.1
487,090 - +0.0
487,231 - 12114 mRNA_3746 0.12 -0.7
487,672 + 12114 mRNA_3746 0.62 +0.1
487,797 + 12114 mRNA_3746 0.76 -2.1

Or see this region's nucleotide sequence