Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3749

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12116 and 12117 are separated by 377 nucleotides12117 and 12118 are separated by 84 nucleotides mRNA_3748: 12116 - K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase), at 490,464 to 492,382 12116 mRNA_3749: 12117 - HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850, at 492,760 to 497,695 12117 mRNA_3750: 12118 - K13421 UMPS uridine monophosphate synthetase, at 497,780 to 498,794 12118

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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492,658 + +0.9
492,796 + -0.9
492,812 + -0.6
492,912 + +0.2
493,092 - -0.5
493,403 - 12117 mRNA_3749 0.13 +0.1
493,494 - 12117 mRNA_3749 0.15 +0.0
493,536 + 12117 mRNA_3749 0.16 -1.7
494,105 - 12117 mRNA_3749 0.27 -0.5
494,139 + 12117 mRNA_3749 0.28 +0.8
494,718 + 12117 mRNA_3749 0.40 -0.0
495,146 + 12117 mRNA_3749 0.48 -0.1
495,290 + 12117 mRNA_3749 0.51 -0.2
495,316 - 12117 mRNA_3749 0.52 -2.0
495,424 - 12117 mRNA_3749 0.54 -0.4
495,426 - 12117 mRNA_3749 0.54 +0.8
495,540 - 12117 mRNA_3749 0.56 +0.5
495,569 + 12117 mRNA_3749 0.57 -0.5
495,599 - 12117 mRNA_3749 0.58 -0.4
495,741 + 12117 mRNA_3749 0.60 +0.2
495,742 + 12117 mRNA_3749 0.60 +0.5
496,449 + 12117 mRNA_3749 0.75 +0.3
496,889 - 12117 mRNA_3749 0.84 -0.2
496,906 + 12117 mRNA_3749 0.84 -0.6
496,922 + 12117 mRNA_3749 0.84 -0.1
497,352 + +0.0

Or see this region's nucleotide sequence