Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3757

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12124 and 12125 are separated by 552 nucleotides12125 and 12126 are separated by 849 nucleotides mRNA_3756: 12124 - HMMPfam-Protein of unknown function (DUF2665)-PF11654, at 513,138 to 513,518 12124 mRNA_3757: 12125 - Hypothetical Protein, at 514,071 to 514,868 12125 mRNA_3758: 12126 - HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208, at 515,718 to 518,534 12126

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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513,091 - -1.1
513,244 + 12124 mRNA_3756 0.28 -0.6
513,289 + 12124 mRNA_3756 0.40 +1.4
513,400 + 12124 mRNA_3756 0.69 -0.3
513,420 - 12124 mRNA_3756 0.74 -2.0
513,544 + -0.7
513,651 + +0.6
513,978 + -0.3
513,991 + +1.8
514,420 + 12125 mRNA_3757 0.44 +1.7
514,568 + 12125 mRNA_3757 0.62 +0.1
514,834 + +0.1
515,000 - -0.0
515,024 + -0.4
515,404 + -0.8
515,415 + -0.8
515,540 + -3.0
515,599 - -1.0
515,785 + -0.6

Or see this region's nucleotide sequence