Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3785

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12152 and 12153 are separated by 357 nucleotides12153 and 12154 are separated by 515 nucleotides mRNA_3784: 12152 - KOG1188 WD40 repeat protein, at 573,950 to 575,324 12152 mRNA_3785: 12153 - K15178 RTF1 RNA polymerase-associated protein RTF1, at 575,682 to 577,961 12153 mRNA_3786: 12154 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 578,477 to 580,207 12154

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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575,416 - +0.1
575,591 + +0.5
575,723 + -0.4
575,929 - 12153 mRNA_3785 0.11 -1.7
576,320 - 12153 mRNA_3785 0.28 -0.7
576,920 + 12153 mRNA_3785 0.54 +0.5
577,063 + 12153 mRNA_3785 0.61 +0.3
578,064 + +0.1
578,071 - -0.0
578,079 + +0.7
578,086 - -0.7
578,096 + -0.2
578,102 + -0.6
578,201 - -0.1
578,223 + +1.0
578,943 - 12154 mRNA_3786 0.27 -0.3

Or see this region's nucleotide sequence