Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3819

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12186 and 12187 are separated by 263 nucleotides12187 and 12188 are separated by 442 nucleotides mRNA_3818: 12186 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 657,932 to 659,126 12186 mRNA_3819: 12187 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 659,390 to 660,393 12187 mRNA_3820: 12188 - K20046 SLA1 actin cytoskeleton-regulatory complex protein SLA1, at 660,836 to 665,185 12188

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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658,455 - 12186 mRNA_3818 0.44 -0.3
658,649 - 12186 mRNA_3818 0.60 +0.9
658,729 - 12186 mRNA_3818 0.67 +0.8
658,843 - 12186 mRNA_3818 0.76 +0.5
658,882 - 12186 mRNA_3818 0.79 -0.4
658,885 + 12186 mRNA_3818 0.80 -1.7
658,978 - 12186 mRNA_3818 0.88 -1.2
659,016 - +0.0
659,059 + +0.2
659,175 - -0.2
659,194 + +2.2
659,476 - -1.1
659,909 - 12187 mRNA_3819 0.52 +0.1
660,409 - -0.5
660,452 - +0.6
660,458 - -0.7
660,492 - +0.0
660,492 - -0.6
660,509 - -0.8
660,539 + +0.5
660,645 - -2.5
660,646 - -0.2
660,676 - +1.2
660,787 + +1.2
660,793 + -0.4
660,824 - -0.3

Or see this region's nucleotide sequence