Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3860

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12227 and 12228 are separated by 359 nucleotides12228 and 12229 are separated by 454 nucleotides mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762,082 to 763,041 12227 mRNA_3860: 12228 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 763,401 to 765,833 12228 mRNA_3861: 12229 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 766,288 to 767,441 12229

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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762,413 - 12227 mRNA_3859 0.34 -0.0
762,552 + 12227 mRNA_3859 0.49 -0.4
762,570 + 12227 mRNA_3859 0.51 -0.3
762,669 - 12227 mRNA_3859 0.61 -1.1
763,096 - -0.4
763,111 - -0.3
763,130 + +0.8
763,276 - -0.6
763,418 - -1.1
763,540 + -0.2
763,652 + 12228 mRNA_3860 0.10 -1.0
763,654 - 12228 mRNA_3860 0.10 +0.0
763,866 - 12228 mRNA_3860 0.19 -0.7
763,931 - 12228 mRNA_3860 0.22 -1.7
763,976 - 12228 mRNA_3860 0.24 -0.3
763,977 + 12228 mRNA_3860 0.24 -0.5
763,977 + 12228 mRNA_3860 0.24 +0.0
764,103 - 12228 mRNA_3860 0.29 +0.1
764,230 + 12228 mRNA_3860 0.34 +0.6
764,286 + 12228 mRNA_3860 0.36 +0.2
764,421 + 12228 mRNA_3860 0.42 -0.4
764,445 - 12228 mRNA_3860 0.43 +0.7
764,447 - 12228 mRNA_3860 0.43 -0.0
764,455 - 12228 mRNA_3860 0.43 -0.5
764,563 - 12228 mRNA_3860 0.48 +0.0
764,615 + 12228 mRNA_3860 0.50 +0.1
764,864 + 12228 mRNA_3860 0.60 -0.4
764,870 + 12228 mRNA_3860 0.60 -0.7
764,895 + 12228 mRNA_3860 0.61 +0.8
765,175 + 12228 mRNA_3860 0.73 +0.4
765,311 - 12228 mRNA_3860 0.79 +0.2
765,342 - 12228 mRNA_3860 0.80 -0.8
765,343 + 12228 mRNA_3860 0.80 -0.0
765,361 + 12228 mRNA_3860 0.81 +1.6
765,431 - 12228 mRNA_3860 0.83 +0.5
765,576 - 12228 mRNA_3860 0.89 +1.0
765,584 + 12228 mRNA_3860 0.90 -0.1
765,729 + -0.2
765,857 + -1.2
766,046 + +0.1
766,177 - -0.4
766,316 - -0.6
766,319 + -1.4
766,425 - 12229 mRNA_3861 0.12 -2.1
766,426 + 12229 mRNA_3861 0.12 -0.5
766,464 + 12229 mRNA_3861 0.15 +0.1
766,485 - 12229 mRNA_3861 0.17 +0.9
766,541 + 12229 mRNA_3861 0.22 -1.6
766,633 + 12229 mRNA_3861 0.30 -0.6
766,759 + 12229 mRNA_3861 0.41 -0.4
766,782 + 12229 mRNA_3861 0.43 -0.0

Or see this region's nucleotide sequence