Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3865

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3865: 12233 - HMMPfam-DASH complex subunit Spc34-PF08657, at 777,036 to 778,951 12233

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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776,373 - -3.1
776,526 + -0.0
776,547 + +1.8
776,648 - -0.5
776,653 - -1.9
776,657 - +0.0
776,660 - -0.2
776,677 + -0.4
776,683 + -0.1
778,139 + 12233 mRNA_3865 0.58 +0.1
778,698 - 12233 mRNA_3865 0.87 -0.7
779,002 - +0.7
779,009 - +0.7
779,012 - +0.0
779,020 + -0.4
779,025 - +1.2
779,029 - -0.2
779,030 - -0.0
779,038 + +1.0
779,039 - -1.2
779,048 + +0.4
779,109 - -0.3
779,120 + -0.8
779,121 + +0.2
779,136 + -0.1
779,172 + +0.6
779,401 - -0.6
779,430 - -0.4
779,438 - +0.3
779,554 + +0.1
779,581 + -0.9
779,597 + +0.4

Or see this region's nucleotide sequence