Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3942

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12309 and 12310 are separated by 374 nucleotides12310 and 12311 are separated by 134 nucleotides mRNA_3941: 12309 - Hypothetical Protein, at 953,111 to 953,710 12309 mRNA_3942: 12310 - K20298 VPS52 vacuolar protein sorting-associated protein 52, at 954,085 to 956,912 12310 mRNA_3943: 12311 - K10843 ERCC3, XPB DNA excision repair protein ERCC-3, at 957,047 to 960,564 12311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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953,117 - -0.4
953,718 + -1.5
953,722 + -2.2
953,835 - -0.1
953,838 + -0.2
953,850 - +0.3
953,850 + -0.6
953,851 - -0.1
953,853 + +0.3
953,963 - -0.6
953,966 - +0.3
953,978 - +0.1
953,987 + +1.4
953,989 + -0.1
953,990 + +1.4
953,990 + +0.4
953,991 - -0.6
953,992 + +0.6
953,992 - +0.7
953,994 - +1.5
953,999 + +0.3
953,999 + -3.6
954,003 + -1.3
954,166 + -0.9
954,570 + 12310 mRNA_3942 0.17 -0.3
955,491 + 12310 mRNA_3942 0.50 -0.6
956,209 - 12310 mRNA_3942 0.75 -1.0
956,652 - +0.6
956,657 + -1.2
956,950 - +0.3
956,952 + -0.4
956,958 + -0.5
956,968 - +0.3

Or see this region's nucleotide sequence