Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3997

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12364 and 12365 are separated by 157 nucleotides12365 and 12366 are separated by 420 nucleotides mRNA_3996: 12364 - Hypothetical Protein, at 1,104,399 to 1,108,726 12364 mRNA_3997: 12365 - Hypothetical Protein, at 1,108,884 to 1,109,667 12365 mRNA_3998: 12366 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,110,088 to 1,111,091 12366

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,108,074 + 12364 mRNA_3996 0.85 +0.2
1,108,104 + 12364 mRNA_3996 0.86 +0.6
1,108,953 + +0.4
1,109,523 - 12365 mRNA_3997 0.82 -1.2
1,109,712 - -0.5

Or see this region's nucleotide sequence