Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4044

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12411 and 12412 are separated by 152 nucleotides12412 and 12413 are separated by 492 nucleotides mRNA_4043: 12411 - Hypothetical Protein, at 1,224,435 to 1,225,613 12411 mRNA_4044: 12412 - Hypothetical Protein, at 1,225,766 to 1,226,356 12412 mRNA_4045: 12413 - Hypothetical Protein, at 1,226,849 to 1,229,104 12413

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,225,031 + 12411 mRNA_4043 0.51 +0.9
1,225,323 + 12411 mRNA_4043 0.75 +0.6
1,225,573 - +0.2
1,225,613 + +0.1
1,225,914 - 12412 mRNA_4044 0.25 -0.5
1,226,217 - 12412 mRNA_4044 0.76 -0.7
1,226,253 + 12412 mRNA_4044 0.82 +0.7
1,226,325 + -1.0
1,226,352 + -0.3
1,226,493 + -0.5
1,226,947 + -0.5

Or see this region's nucleotide sequence