Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4180

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12547 and 12548 are separated by 259 nucleotides12548 and 12549 are separated by 337 nucleotides mRNA_4179: 12547 - KOG0429 Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death, at 1,547,338 to 1,548,132 12547 mRNA_4180: 12548 - K03260 EIF4G translation initiation factor 4G, at 1,548,392 to 1,550,884 12548 mRNA_4181: 12549 - Hypothetical Protein, at 1,551,222 to 1,553,388 12549

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,547,536 + 12547 mRNA_4179 0.25 -0.3
1,547,537 + 12547 mRNA_4179 0.25 -0.4
1,547,554 - 12547 mRNA_4179 0.27 -0.7
1,548,134 - -0.4
1,548,166 + -1.1
1,548,253 + +0.8
1,548,293 + -1.0
1,551,388 - +1.5

Or see this region's nucleotide sequence